Crystal structures of a novel, thermostable phytase in partially and fully calcium-loaded states

Phytases hydrolyze phytic acid to less phosphorylated myo-inositol derivatives and inorganic phosphate. A thermostable phytase is of great value in applications for improving phosphate and metal ion availability in animal feed, and thereby reducing phosphate pollution to the environment. Here, we report a new folding architecture of a six-bladed propeller for phosphatase activity revealed by the 2.1 Å crystal structures of a novel, thermostable phytase determined in both the partially and fully Ca2+-loaded states. Binding of two calcium ions to high-affinity calcium binding sites results in a dramatic increase in thermostability (by as much as ∼30°C in melting temperature) by joining loop segments remote in the amino acid sequence. Binding of three additional calcium ions to low-affinity calcium binding sites at the top of the molecule turns on the catalytic activity of the enzyme by converting the highly negatively charged cleft into a favorable environment for the binding of phytate.

[1]  Alfred Wittinghofer,et al.  The 1.7 Å crystal structure of the regulator of chromosome condensation (RCC1) reveals a seven-bladed propeller , 1998, Nature.

[2]  J. Springer,et al.  Structure of inositol monophosphatase, the putative target of lithium therapy. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[3]  A. H. Ullah,et al.  Identification and cloning of a second phytase gene (phyB) from Aspergillus niger (ficuum). , 1993, Biochemical and biophysical research communications.

[4]  A. Engelen,et al.  Simple and rapid determination of phytase activity. , 1994, Journal of AOAC International.

[5]  K. H. Kalk,et al.  The 1.7 A crystal structure of the apo form of the soluble quinoprotein glucose dehydrogenase from Acinetobacter calcoaceticus reveals a novel internal conserved sequence repeat. , 1999, Journal of molecular biology.

[6]  Z. Otwinowski,et al.  Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[7]  J. N. Varghese,et al.  Structure of the influenza virus glycoprotein antigen neuraminidase at 2.9 Å resolution , 1983, Nature.

[8]  H. Hamm,et al.  The 2.0 Å crystal structure of a heterotrimeric G protein , 1996, Nature.

[9]  P Argos,et al.  Protein thermal stability, hydrogen bonds, and ion pairs. , 1997, Journal of molecular biology.

[10]  Nisse Kalkkinen,et al.  Isolation, Characterization, Molecular Gene Cloning, and Sequencing of a Novel Phytase from Bacillus subtilis , 1998, Applied and Environmental Microbiology.

[11]  G. Cromwell Biological availability of phosphorus for pigs , 1980 .

[12]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[13]  T. Oh,et al.  Cloning of the thermostable phytase gene (phy) from Bacillus sp. DS11 and its overexpression in Escherichia coli. , 1998, FEMS microbiology letters.

[14]  Q. Ye,et al.  Purification, crystallization and preliminary X-ray analysis of the Escherichia coli phytase. , 1998, Acta Crystallographica Section D: Biological Crystallography.

[15]  S. Safrany,et al.  Molecular cloning and expression of a rat hepatic multiple inositol polyphosphate phosphatase. , 1997, The Biochemical journal.

[16]  E. Querol,et al.  Analysis of protein conformational characteristics related to thermostability. , 1996, Protein engineering.

[17]  R. Huber,et al.  Activation of Bacillus licheniformis alpha-amylase through a disorder-->order transition of the substrate-binding site mediated by a calcium-sodium-calcium metal triad. , 1998, Structure.

[18]  A. H. Ullah,et al.  Cyclohexanedione modification of arginine at the active site of Aspergillus ficuum phytase. , 1991, Biochemical and biophysical research communications.

[19]  F. S. Mathews,et al.  Crystal structure of inositol polyphosphate 1-phosphatase at 2.3-A resolution. , 1994, Biochemistry.

[20]  R M Esnouf,et al.  An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. , 1997, Journal of molecular graphics & modelling.

[21]  D. K. Salunkhe,et al.  Phytates in legumes and cereals. , 1982, Advances in food research.

[22]  Neil F. W. Saunders,et al.  Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme , 1997, Nature.

[23]  B. Honig,et al.  Classical electrostatics in biology and chemistry. , 1995, Science.

[24]  C. Sander,et al.  Protein structure comparison by alignment of distance matrices. , 1993, Journal of molecular biology.

[25]  B. Oh,et al.  Preliminary X-ray crystallographic analysis of a novel phytase from a Bacillus amyloliquefaciens strain. , 1999, Acta crystallographica. Section D, Biological crystallography.

[26]  W. Lipscomb,et al.  Molecular structure of fructose-1,6-bisphosphatase at 2.8-A resolution. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[27]  T. Oh,et al.  Purification and properties of a thermostable phytase from Bacillus sp. DS11 , 1998 .

[28]  D. Ladant Calcium and membrane binding properties of bovine neurocalcin delta expressed in Escherichia coli. , 1995, Journal of Biological Chemistry.

[29]  M. James,et al.  Refined crystal structure of troponin C from turkey skeletal muscle at 2.0 A resolution. , 1988, Journal of molecular biology.

[30]  S. Sprang,et al.  The structure of the G protein heterotrimer Giα1 β 1 γ 2 , 1995, Cell.

[31]  Clemens Broger,et al.  Crystal structure of phytase from Aspergillus ficuum at 2.5 Å resolution , 1997, Nature Structural Biology.

[32]  Axel T. Brunger,et al.  X-PLOR Version 3.1: A System for X-ray Crystallography and NMR , 1992 .

[33]  E A Merritt,et al.  Raster3D Version 2.0. A program for photorealistic molecular graphics. , 1994, Acta crystallographica. Section D, Biological crystallography.