Structural basis for retroviral integration into nucleosomes
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Rishi Matadeen | Ludovic Renault | Alessandro Costa | A. Engelman | Erik Serrao | R. Matadeen | Alessandro Costa | L. Renault | P. Cherepanov | D. Lindemann | D. Maskell | P. Lesbats | S. Hare | Erik Serrao | Peter Cherepanov | Stephen Hare | Alan N. Engelman | Paul Lesbats | Daniel P. Maskell | Dirk Lindemann
[1] Wen Jiang,et al. EMAN2: an extensible image processing suite for electron microscopy. , 2007, Journal of structural biology.
[2] Manolis Kellis,et al. Constitutive nuclear lamina–genome interactions are highly conserved and associated with A/T-rich sequence , 2013, Genome research.
[3] Harold E. Varmus,et al. Nucleosomes, DNA-binding proteins, and DNA sequence modulate retroviral integration target site selection , 1992, Cell.
[4] G. Schnitzler. Isolation of Histones and Nucleosome Cores from Mammalian Cells , 2000, Current protocols in molecular biology.
[5] L. Wessels,et al. Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions , 2008, Nature.
[6] Differential pH-dependent cellular uptake pathways among foamy viruses elucidated using dual-colored fluorescent particles , 2012, Retrovirology.
[7] C. von Kalle,et al. Genome-wide mapping of foamy virus vector integrations into a human cell line. , 2006, The Journal of general virology.
[8] F. Bushman,et al. Human immunodeficiency virus integrase directs integration to sites of severe DNA distortion within the nucleosome core. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[9] Paul Shinn,et al. HIV-1 Integration in the Human Genome Favors Active Genes and Local Hotspots , 2002, Cell.
[10] Aaron R. Quinlan,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .
[11] Conrad C. Huang,et al. UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..
[12] J Bernard Heymann,et al. Bsoft: image processing and molecular modeling for electron microscopy. , 2007, Journal of structural biology.
[13] Goedele N. Maertens,et al. The mechanism of retroviral integration through X-ray structures of its key intermediates , 2010, Nature.
[14] Daniel F Voytas,et al. A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon. , 2012, Genome research.
[15] S. Montaño,et al. The Mu transpososome structure sheds light on DDE recombinase evolution , 2012, Nature.
[16] J. Widom,et al. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. , 1998, Journal of molecular biology.
[17] D. Lindemann,et al. Improved Primate Foamy Virus Vectors and Packaging Constructs , 2002, Journal of Virology.
[18] Suraiya Rasheed,et al. Characterization of a newly derived human sarcoma cell line (HT‐1080) , 1974, Cancer.
[19] W. Weissenhorn,et al. Subviral Particle Release Determinants of Prototype Foamy Virus , 2008, Journal of Virology.
[20] Wei Yang,et al. Assembly of prototype foamy virus strand transfer complexes on product DNA bypassing catalysis of integration , 2012, Protein science : a publication of the Protein Society.
[21] F. Bushman,et al. Solution conformations of prototype foamy virus integrase and its stable synaptic complex with U5 viral DNA. , 2012, Structure.
[22] Chao Yang,et al. SPARX, a new environment for Cryo-EM image processing. , 2007, Journal of structural biology.
[23] Robert Craigie,et al. Retroviral DNA integration: reaction pathway and critical intermediates , 2006, The EMBO journal.
[24] H. Varmus,et al. DNA bending creates favored sites for retroviral integration: an explanation for preferred insertion sites in nucleosomes. , 1994, The EMBO journal.
[25] Kevin Struhl,et al. Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II. , 2006, Molecular cell.
[26] A. G. Chatterjee,et al. Serial number tagging reveals a prominent sequence preference of retrotransposon integration , 2014, Nucleic acids research.
[27] P. Roversi,et al. Functional and structural characterization of the integrase from the prototype foamy virus , 2008, Nucleic acids research.
[28] Hans-Peter Kiem,et al. Foamy virus vector integration sites in normal human cells , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[29] M van Heel,et al. A new generation of the IMAGIC image processing system. , 1996, Journal of structural biology.
[30] A. Engelman,et al. Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases. , 1994, Science.
[31] F. Bushman,et al. HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications. , 2007, Genome research.
[32] T. Richmond,et al. Crystal structure of the nucleosome core particle at 2.8 Å resolution , 1997, Nature.
[33] David Landsman,et al. Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers. , 2015, Current opinion in structural biology.
[34] Sjors H.W. Scheres,et al. RELION: Implementation of a Bayesian approach to cryo-EM structure determination , 2012, Journal of structural biology.
[35] Maxwell D. Cummings,et al. Molecular mechanisms of retroviral integrase inhibition and the evolution of viral resistance , 2010, Proceedings of the National Academy of Sciences.
[36] A. Engelman,et al. Retroviral intasome assembly and inhibition of DNA strand transfer , 2010, Nature.
[37] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[38] H. Varmus,et al. Retroviral integration into minichromosomes in vitro. , 1992, The EMBO journal.
[39] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[40] H. Zentgraf,et al. Novel Functions of Prototype Foamy Virus Gag Glycine- Arginine-Rich Boxes in Reverse Transcription and Particle Morphogenesis , 2010, Journal of Virology.
[41] Frederic D. Bushman,et al. Gammaretroviral Integration into Nucleosomal Target DNA In Vivo , 2011, Journal of Virology.
[42] J M Carazo,et al. Xmipp 3.0: an improved software suite for image processing in electron microscopy. , 2013, Journal of structural biology.
[43] Kenneth A. Matreyek,et al. Host and viral determinants for MxB restriction of HIV-1 infection , 2014, Retrovirology.
[44] S. Henikoff,et al. Genome-Wide Kinetics of Nucleosome Turnover Determined by Metabolic Labeling of Histones , 2010, Science.
[45] E. S,et al. Reconstitution of Nucleosome Core Particles from Recombinant Histones and DNA , 2003 .
[46] P. Cherepanov,et al. 3′-Processing and strand transfer catalysed by retroviral integrase in crystallo , 2012, The EMBO journal.
[47] N. Grigorieff,et al. Accurate determination of local defocus and specimen tilt in electron microscopy. , 2003, Journal of structural biology.
[48] T. Richmond,et al. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution. , 2002, Journal of molecular biology.