Translating cancer 'omics' to improved outcomes.
暂无分享,去创建一个
Keith Robison | Raj Chari | W. Lam | K. Robison | R. Chari | K. Thu | C. E. Alvarez | E. Vucic | Leszek A Rybaczyk | Wan L Lam | Carlos E Alvarez | Emily A Vucic | Kelsie L Thu
[1] T. Stricker,et al. Molecular profiling of cancer--the future of personalized cancer medicine: a primer on cancer biology and the tools necessary to bring molecular testing to the clinic. , 2011, Seminars in oncology.
[2] Brian H. Dunford-Shore,et al. Somatic mutations affect key pathways in lung adenocarcinoma , 2008, Nature.
[3] Trevor J Pugh,et al. Initial genome sequencing and analysis of multiple myeloma , 2011, Nature.
[4] M. McDevitt,et al. SNP Array Karyotyping Allows for the Detection of Uniparental Disomy and Cryptic Chromosomal Abnormalities in MDS/MPD-U and MPD , 2007, PloS one.
[5] Jeremiah D. Degenhardt,et al. A Simple Genetic Architecture Underlies Morphological Variation in Dogs , 2010, PLoS biology.
[6] A. Barabasi,et al. Interactome Networks and Human Disease , 2011, Cell.
[7] Kunihiko Kobayashi,et al. 3) Non-small Cell Lung Cancer , 2012 .
[8] G. Giaccone,et al. American Society of Clinical Oncology provisional clinical opinion: epidermal growth factor receptor (EGFR) Mutation testing for patients with advanced non-small-cell lung cancer considering first-line EGFR tyrosine kinase inhibitor therapy. , 2011, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[9] William Pao,et al. Rational, biologically based treatment of EGFR-mutant non-small-cell lung cancer , 2010, Nature Reviews Cancer.
[10] K. Flaherty,et al. Inhibition of mutated, activated BRAF in metastatic melanoma. , 2010, The New England journal of medicine.
[11] M. Somerfield,et al. American Society of Clinical Oncology provisional clinical opinion: testing for KRAS gene mutations in patients with metastatic colorectal carcinoma to predict response to anti-epidermal growth factor receptor monoclonal antibody therapy. , 2009, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[12] Seung-Yong Jeong,et al. Analysis of KRAS, BRAF, PTEN, IGF1R, EGFR intron 1 CA status in both primary tumors and paired metastases in determining benefit from cetuximab therapy in colon cancer , 2011, Cancer Chemotherapy and Pharmacology.
[13] S. Gabriel,et al. EGFR Mutations in Lung Cancer: Correlation with Clinical Response to Gefitinib Therapy , 2004, Science.
[14] H. Varmus,et al. Lung adenocarcinomas induced in mice by mutant EGF receptors found in human lung cancers respond to a tyrosine kinase inhibitor or to down-regulation of the receptors. , 2006, Genes & development.
[15] Richard Doll,et al. Smoking, smoking cessation, and lung cancer in the UK since 1950: combination of national statistics with two case-control studies , 2000, BMJ : British Medical Journal.
[16] D. Hungerford. Chromosome studies in human leukemia. 1. Acute leukemia in children. , 1961, Journal of the National Cancer Institute.
[17] R. Jaenisch,et al. Chromosomal Instability and Tumors Promoted by DNA Hypomethylation , 2003, Science.
[18] C. Hudis. Trastuzumab--mechanism of action and use in clinical practice. , 2007, The New England journal of medicine.
[19] Bradley P. Coe,et al. Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer , 2010, Cancer and Metastasis Reviews.
[20] L. Chin,et al. Chimeric mouse tumor models reveal differences in pathway activation between ERBB family– and KRAS-dependent lung adenocarcinomas , 2010, Nature Biotechnology.
[21] W. Pao,et al. How genetically engineered mouse tumor models provide insights into human cancers. , 2011, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[22] Jannik N. Andersen,et al. Cancer genomics: from discovery science to personalized medicine , 2011, Nature Medicine.
[23] J. Mao,et al. Cancer evolution and individual susceptibility. , 2011, Integrative biology : quantitative biosciences from nano to macro.
[24] K. Syrigos,et al. Targeted therapy for gastrointestinal stromal tumors: current status and future perspectives , 2010, Cancer and Metastasis Reviews.
[25] Joshua D. Swartz,et al. Mapping DNA structural variation in dogs. , 2009, Genome research.
[26] Boris Pasche,et al. Whole-genome sequencing: a step closer to personalized medicine. , 2011, JAMA.
[27] Charles Swanton,et al. Breast cancer genome heterogeneity: a challenge to personalised medicine? , 2011, Breast Cancer Research.
[28] H. Ohtsuki,et al. Accumulation of driver and passenger mutations during tumor progression , 2009, Proceedings of the National Academy of Sciences.
[29] T. Mikkelsen,et al. The NIH Roadmap Epigenomics Mapping Consortium , 2010, Nature Biotechnology.
[30] G. Poste. Bring on the biomarkers , 2011, Nature.
[31] Francisco Cervantes,et al. Five-year follow-up of patients receiving imatinib for chronic myeloid leukemia. , 2006, The New England journal of medicine.
[32] M. Toyota,et al. A Novel Correlation between LINE-1 Hypomethylation and the Malignancy of Gastrointestinal Stromal Tumors , 2010, Clinical Cancer Research.
[33] Julie O. Culver,et al. Genetics, genomics, and cancer risk assessment , 2011, CA: a cancer journal for clinicians.
[34] C. Gatsonis,et al. Reduced Lung-Cancer Mortality with Low-Dose Computed Tomographic Screening , 2012 .
[35] Shiladitya Sengupta,et al. Inactivation of human mutL homolog 1 and mutS homolog 2 genes in head and neck squamous cell carcinoma tumors and leukoplakia samples by promoter hypermethylation and its relation with microsatellite instability phenotype , 2007, Cancer.
[36] E. Ostrander,et al. Man's best friend becomes biology's best in show: genome analyses in the domestic dog. , 2010, Annual review of genetics.
[37] A. Russo,et al. Prognostic vs predictive molecular biomarkers in colorectal cancer: is KRAS and BRAF wild type status required for anti-EGFR therapy? , 2010, Cancer treatment reviews.
[38] A. Børresen-Dale,et al. COMPLEX LANDSCAPES OF SOMATIC REARRANGEMENT IN HUMAN BREAST CANCER GENOMES , 2009, Nature.
[39] G. Church,et al. The Personal Genome Project , 2005, Molecular systems biology.
[40] B. Druker,et al. Translation of the Philadelphia chromosome into therapy for CML. , 2008, Blood.
[41] N. Rosen,et al. Mutant BRAF melanomas--dependence and resistance. , 2011, Cancer cell.
[42] M. Loda,et al. Methylation of the hMLH1 promoter correlates with lack of expression of hMLH1 in sporadic colon tumors and mismatch repair-defective human tumor cell lines. , 1997, Cancer research.
[43] Michael E Phelps,et al. Systems Biology and New Technologies Enable Predictive and Preventative Medicine , 2004, Science.
[44] Dongsheng Tu,et al. K-ras mutations and benefit from cetuximab in advanced colorectal cancer. , 2008, The New England journal of medicine.
[45] Li Ding,et al. Identification of a novel TP53 cancer susceptibility mutation through whole-genome sequencing of a patient with therapy-related AML. , 2011, JAMA.
[46] J. Minna,et al. ALK inhibition for non-small cell lung cancer: from discovery to therapy in record time. , 2010, Cancer cell.
[47] P. Jänne,et al. Mechanisms of Acquired Resistance to Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitors in Non–Small Cell Lung Cancer , 2008, Clinical Cancer Research.
[48] E. Birney,et al. A small cell lung cancer genome reports complex tobacco exposure signatures , 2009, Nature.
[49] Michael Peyton,et al. Alterations in Genes of the EGFR Signaling Pathway and Their Relationship to EGFR Tyrosine Kinase Inhibitor Sensitivity in Lung Cancer Cell Lines , 2009, PloS one.
[50] A. Cassidy,et al. Hypomethylation of retrotransposable elements correlates with genomic instability in non‐small cell lung cancer , 2009, International journal of cancer.
[51] B. Gillespie,et al. Patterns of absolute risk of lung cancer mortality in former smokers. , 1993, Journal of the National Cancer Institute.
[52] Motohiro Kato,et al. Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide-polymorphism genotyping microarrays. , 2007, American journal of human genetics.
[53] A. Sparks,et al. The mutation spectrum revealed by paired genome sequences from a lung cancer patient , 2010, Nature.
[54] Inyoul Lee,et al. Systems Biology and the Discovery of Diagnostic Biomarkers , 2010, Disease markers.
[55] Shuji Ogino,et al. Prognostic significance of CDKN2A (p16) promoter methylation and loss of expression in 902 colorectal cancers: Cohort study and literature review , 2011, International journal of cancer.
[56] T. C. McLoud,et al. Lung carcinoma. , 1999, Clinics in chest medicine.
[57] M. Spitz,et al. Lung carcinoma in former smokers , 1996, Cancer.
[58] J. Uhm. Comprehensive genomic characterization defines human glioblastoma genes and core pathways , 2009 .
[59] Y. Lussier,et al. The Emergence of Genome-Based Drug Repositioning , 2011, Science Translational Medicine.
[60] Charles M. Perou,et al. Deconstructing the molecular portraits of breast cancer , 2010, Molecular oncology.
[61] Elias Campo Guerri,et al. International network of cancer genome projects , 2010 .
[62] Peter H. Baenziger,et al. In silico functional profiling of human disease‐associated and polymorphic amino acid substitutions , 2010, Human mutation.
[63] B. Firestone. The challenge of selecting the 'right' in vivo oncology pharmacology model. , 2010, Current opinion in pharmacology.
[64] Richard Simon,et al. Identifying cancer driver genes in tumor genome sequencing studies , 2011, Bioinform..
[65] Ken Chen,et al. Use of whole-genome sequencing to diagnose a cryptic fusion oncogene. , 2011, JAMA.
[66] Arlene A. Forastiere,et al. Head and Neck , 1998, Indian Journal of Radiology and Imaging.
[67] C. Papadimitriou,et al. Mechanisms of resistance to epidermal growth factor receptor tyrosine kinase inhibitors in patients with advanced non-small-cell lung cancer: clinical and molecular considerations. , 2011, Current medicinal chemistry.
[68] P. Nederlof,et al. EGFR and KRAS mutations as criteria for treatment with tyrosine kinase inhibitors: retro- and prospective observations in non-small-cell lung cancer. , 2006, Annals of oncology : official journal of the European Society for Medical Oncology.
[69] S. Hoffmann. Computational analysis of high throughput sequencing data. , 2011, Methods in molecular biology.
[70] S. De,et al. DNA secondary structures and epigenetic determinants of cancer genome evolution , 2010, Nature Structural &Molecular Biology.
[71] T. Fojo,et al. Biologically Targeted Cancer Therapy and Marginal Benefits: Are We Making Too Much of Too Little or Are We Achieving Too Little by Giving Too Much? , 2010, Clinical Cancer Research.
[72] Calum MacAulay,et al. Oncogene Mutations, Copy Number Gains and Mutant Allele Specific Imbalance (MASI) Frequently Occur Together in Tumor Cells , 2009, PloS one.
[73] J. Ahn,et al. The 18p11.22 locus is associated with never smoker non-small cell lung cancer susceptibility in Korean populations , 2011, Human Genetics.
[74] R. Rizwana,et al. CpG methylation reduces genomic instability. , 1999, Journal of Cell Science.
[75] Predrag Radivojac,et al. Gain and Loss of Phosphorylation Sites in Human Cancer , 2022 .
[76] C. Greenman,et al. Germline Fitness-Based Scoring of Cancer Mutations , 2011, Genetics.
[77] O. Sieber,et al. APC and the three-hit hypothesis , 2009, Oncogene.
[78] R. Hampson. Selection for genome instability by DNA damage in human cells: unstable microsatellites and their consequences for tumourigenesis. , 1997, Radiation oncology investigations.
[79] J. Reid,et al. Analysis of PTEN, BRAF, and EGFR status in determining benefit from cetuximab therapy in wild-type KRAS metastatic colon cancer. , 2009, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[80] Raj Chari,et al. An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer , 2010, BMC Systems Biology.
[81] M. Stratton,et al. Statistical Analysis of Pathogenicity of Somatic Mutations in Cancer , 2006, Genetics.
[82] E. Petricoin,et al. Cancer biomarkers: closer to delivering on their promise. , 2011, Cancer Cell.
[83] N. M. A. El-Maqsoud,et al. Head and neck squamous cell carcinoma: mismatch repair immunohistochemistry and promoter hypermethylation of hMLH1 gene. , 2011, American journal of otolaryngology.
[84] L. Santarpia,et al. Breast cancer assessment tools and optimizing adjuvant therapy , 2010, Nature Reviews Clinical Oncology.
[85] H. Aburatani,et al. Identification of the transforming EML4–ALK fusion gene in non-small-cell lung cancer , 2007, Nature.
[86] W. Lam,et al. Mitochondrial DNA mutations in respiratory complex‐I in never‐smoker lung cancer patients contribute to lung cancer progression and associated with EGFR gene mutation , 2012, Journal of cellular physiology.
[87] T. Jacks,et al. Conditional mouse lung cancer models using adenoviral or lentiviral delivery of Cre recombinase , 2009, Nature Protocols.
[88] Brynn H Voy,et al. Genetic analysis in the Collaborative Cross breeding population. , 2011, Genome research.
[89] Keith Robison,et al. Application of second-generation sequencing to cancer genomics , 2010, Briefings Bioinform..
[90] L. Garraway,et al. Oncogenic Activating Mutations Are Associated with Local Copy Gain , 2009, Molecular Cancer Research.
[91] Giovanni Parmigiani,et al. Patient-oriented gene set analysis for cancer mutation data , 2010, Genome Biology.
[92] G. Canellos,et al. Chronic granulocytic leukemia. , 1976, The Medical clinics of North America.
[93] Yuan Qi,et al. Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA , IDH 1 , EGFR , and NF 1 Citation Verhaak , 2010 .
[94] P. Nowell,et al. Chromosome studies in human leukemia. II. Chronic granulocytic leukemia. , 1961, Journal of the National Cancer Institute.
[95] Misha Angrist,et al. Personal genomes in progress: from the Human Genome Project to the Personal Genome Project , 2010, Dialogues in clinical neuroscience.
[96] L. Tanoue,et al. Anaplastic Lymphoma Kinase Inhibition in Non–Small-Cell Lung Cancer , 2012 .
[97] Q. Hasan,et al. Microsatellite instability analysis and its correlation with hMLH1 repair gene hypermethylation status in esophageal pathologies including cancers. , 2010, Cancer biomarkers : section A of Disease markers.
[98] C. E. Alvarez,et al. Dog models of naturally occurring cancer. , 2011, Trends in molecular medicine.
[99] Virginia Espina,et al. Molecular Profiling , 2012, Methods in Molecular Biology.
[100] M. McDevitt,et al. 250K single nucleotide polymorphism array karyotyping identifies acquired uniparental disomy and homozygous mutations, including novel missense substitutions of c-Cbl, in myeloid malignancies. , 2008, Cancer research.
[101] Andrew Menzies,et al. Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution. , 2007, Genome research.
[102] F. Bertucci,et al. Integrated Genomic Analysis of Breast Cancers , 2012, Balkan journal of medical genetics : BJMG.
[103] Kenneth Offit,et al. Personalized medicine: new genomics, old lessons , 2011, Human Genetics.
[104] C. Sawyers. The cancer biomarker problem , 2008, Nature.
[105] J. Baselga,et al. The Evolving War on Cancer , 2011, Cell.
[106] Renato Martins,et al. Non-small cell lung cancer. , 2012, Journal of the National Comprehensive Cancer Network : JNCCN.
[107] Ruth Etzioni,et al. Early detection: The case for early detection , 2003, Nature Reviews Cancer.
[108] Steven J. M. Jones,et al. Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors , 2010, Genome Biology.
[109] Patricia L. Harris,et al. Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib. , 2004, The New England journal of medicine.
[110] Susumu Goto,et al. KEGG for representation and analysis of molecular networks involving diseases and drugs , 2009, Nucleic Acids Res..