Transcript Normalization and Segmentation of Tiling Array Data
暂无分享,去创建一个
Gunnar Rätsch | Georg Zeller | Detlef Weigel | Stefan R. Henz | Sascha Laubinger | G. Zeller | G. Rätsch | D. Weigel | S. Laubinger
[1] Wolfgang Huber,et al. A high-resolution map of transcription in the yeast genome. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[2] Thomas E. Royce,et al. Global Identification of Human Transcribed Sequences with Genome Tiling Arrays , 2004, Science.
[3] Mark Gerstein,et al. Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping. , 2005, Trends in genetics : TIG.
[4] Wolfgang Huber,et al. Transcript mapping with high-density oligonucleotide tiling arrays , 2006, Bioinform..
[5] Sean R. Eddy,et al. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids , 1998 .
[6] Gunnar Rätsch,et al. RASE: recognition of alternatively spliced exons in C.elegans , 2005, ISMB.
[7] P. Perron,et al. Computation and Analysis of Multiple Structural-Change Models , 1998 .
[8] Jungwon Yoon,et al. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community , 2003, Nucleic Acids Res..
[9] Ben Taskar,et al. Max-Margin Markov Networks , 2003, NIPS.
[10] Brendan J. Frey,et al. GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data , 2006, J. Comput. Biol..
[11] Gunnar Rätsch,et al. Improving the Caenorhabditis elegans Genome Annotation Using Machine Learning , 2006, PLoS Comput. Biol..
[12] David Kulp,et al. Model-P: a basecalling method for resequencing microarrays of diploid samples , 2005, ECCB/JBI.
[13] Gunnar Rätsch,et al. Large Scale Multiple Kernel Learning , 2006, J. Mach. Learn. Res..
[14] The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.
[15] Mayte Suárez-Fariñas,et al. Harshlight: a "corrective make-up" program for microarray chips , 2005, BMC Bioinformatics.
[16] Arthur E. Hoerl,et al. Ridge Regression: Biased Estimation for Nonorthogonal Problems , 2000, Technometrics.
[17] Clifford A. Meyer,et al. Chromosome-Wide Mapping of Estrogen Receptor Binding Reveals Long-Range Regulation Requiring the Forkhead Protein FoxA1 , 2005, Cell.
[18] Terence P. Speed,et al. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..
[19] Mark Gerstein,et al. Assessing the need for sequence-based normalization in tiling microarray experiments , 2007, Bioinform..
[20] A. E. Hoerl,et al. Ridge regression: biased estimation for nonorthogonal problems , 2000 .
[21] Richard M. Clark,et al. Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana , 2007, Science.
[22] Alexander J. Smola,et al. Learning with kernels , 1998 .
[23] Thomas Hofmann,et al. Hidden Markov Support Vector Machines , 2003, ICML.