high-throughput sequenced genomes Combinatorial algorithms for structural variation detection in Material Supplemental

Material Supplemental http://genome.cshlp.org/content/suppl/2009/05/18/gr.088633.108.DC1.html Related Content Genome Res. September , 2009 19: 1579-1585 Heather C. Mefford, Gregory M. Cooper, Troy Zerr, et al. associated with neurocognitive disease A method for rapid, targeted CNV genotyping identifies rare variants References http://genome.cshlp.org/content/19/7/1270.full.html#related-urls Article cited in: http://genome.cshlp.org/content/19/7/1270.full.html#ref-list-1 This article cites 31 articles, 9 of which can be accessed free at:

[1]  Dawei Li,et al.  The diploid genome sequence of an Asian individual , 2008, Nature.

[2]  R. Durbin,et al.  Mapping Quality Scores Mapping Short Dna Sequencing Reads and Calling Variants Using P

, 2022 .

[3]  Nancy F. Hansen,et al.  Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.

[4]  Gabor T. Marth,et al.  Rapid whole-genome mutational profiling using next-generation sequencing technologies. , 2008, Genome research.

[5]  Vladimir Yanovski,et al.  Read Mapping Algorithms for Single Molecule Sequencing Data , 2008, WABI.

[6]  Seunghak Lee,et al.  A robust framework for detecting structural variations in a genome , 2008, ISMB.

[7]  Antony V. Cox,et al.  Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing , 2008, Nature Genetics.

[8]  Joshua M. Korn,et al.  Mapping and sequencing of structural variation from eight human genomes , 2008, Nature.

[9]  J. Lupski,et al.  The complete genome of an individual by massively parallel DNA sequencing , 2008, Nature.

[10]  Ali Bashir,et al.  Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer , 2008, PLoS Comput. Biol..

[11]  S. Salzberg,et al.  Bioinformatics challenges of new sequencing technology. , 2008, Trends in genetics : TIG.

[12]  E. Mardis.  The impact of next-generation sequencing technology on genetics. , 2008, Trends in genetics : TIG.

[13]  Gabor T. Marth,et al.  Whole-genome sequencing and variant discovery in C. elegans , 2008, Nature Methods.

[14]  Philip M. Kim,et al.  Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome , 2007, Science.

[15]  Timothy B. Stockwell,et al.  The Diploid Genome Sequence of an Individual Human , 2007, PLoS biology.

[16]  E. Eichler,et al.  Mutational and selective effects on copy-number variants in the human genome , 2007, Nature Genetics.

[17]  D. Altshuler,et al.  Completing the map of human genetic variation , 2007, Nature.

[18]  J. Lupski.  Structural variation in the human genome. , 2007, The New England journal of medicine.

[19]  D. Conrad,et al.  Global variation in copy number in the human genome , 2006, Nature.

[20]  Andrew J Sharp,et al.  Structural variation of the human genome. , 2006, Annual review of genomics and human genetics.

[21]  Granger G. Sutton,et al.  A Tool for Analyzing Mate Pairs in Assemblies (TAMPA) , 2005, J. Comput. Biol..

[22]  E. Eichler,et al.  Fine-scale structural variation of the human genome , 2005, Nature Genetics.

[23]  M. Olivier.  A haplotype map of the human genome. , 2003, Nature.

[24]  L. Feuk,et al.  Detection of large-scale variation in the human genome , 2004, Nature Genetics.

[25]  Kenny Q. Ye,et al.  Large-Scale Copy Number Polymorphism in the Human Genome , 2004, Science.

[26]  J. Shendure,et al.  Advanced sequencing technologies: methods and goals , 2004, Nature Reviews Genetics.

[27]  Peter Gill,et al.  Genetic variation of recent Alu insertions in human populations , 2004, Journal of Molecular Evolution.

[28]  Benjamin J. Raphael,et al.  Reconstructing tumor genome architectures , 2003, ECCB.

[29]  K. Chin,et al.  End-sequence profiling: Sequence-based analysis of aberrant genomes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[30]  †The International HapMap Consortium.  The International HapMap Project , 2003, Nature.

[31]  S. Boissinot,et al.  L1 (LINE-1) retrotransposon evolution and amplification in recent human history. , 2000, Molecular biology and evolution.

[32]  P. Green,et al.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.

[33]  P Green,et al.  Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.