Frequent template switching in postreplication gaps: suppression of deleterious consequences by the Escherichia coli Uup and RadD proteins
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Antoine M. van Oijen | A. V. van Oijen | S. Lovett | M. Cox | E. Wood | Stefanie H. Chen | Andrew Robinson | Sindhu Chitteni-Pattu | Sarah S Henrikus | D. J. Glass | Alexander E. Ferrazzoli | Zachary J Romero | Thomas J Armstrong | Sarah S. Henrikus
[1] E. Krin,et al. RadD Contributes to R-Loop Avoidance in Sub-MIC Tobramycin , 2019, mBio.
[2] S. Ben-Yehuda,et al. Bacillus subtilis DisA regulates RecA-mediated DNA strand exchange , 2019, Nucleic acids research.
[3] Judith Oehler,et al. Factors affecting template switch recombination associated with restarted DNA replication , 2019, eLife.
[4] Antoine M. van Oijen,et al. Spatial and temporal organization of RecA in the Escherichia coli DNA-damage response , 2018, bioRxiv.
[5] S. Percival,et al. Mode of action of poloxamer‐based surfactants in wound care and efficacy on biofilms , 2018, International wound journal.
[6] Antoine M. van Oijen,et al. DNA polymerase IV primarily operates outside of DNA replication forks in Escherichia coli , 2018, PLoS genetics.
[7] M. Lamers,et al. Single-molecule studies contrast ordered DNA replication with stochastic translesion synthesis , 2017, eLife.
[8] J. Loparo,et al. Single-molecule imaging reveals multiple pathways for the recruitment of translesion polymerases after DNA damage , 2017, Nature Communications.
[9] D. Cortez,et al. Functions of SMARCAL1, ZRANB3, and HLTF in maintaining genome stability , 2017, Critical reviews in biochemistry and molecular biology.
[10] Raquel Herrador,et al. Replication Fork Slowing and Reversal upon DNA Damage Require PCNA Polyubiquitination and ZRANB3 DNA Translocase Activity , 2017, Molecular cell.
[11] S. Lovett. Template-switching during replication fork repair in bacteria. , 2017, DNA repair.
[12] M. Osborne,et al. PCNA ubiquitylation ensures timely completion of unperturbed DNA replication in fission yeast , 2017, PLoS genetics.
[13] D. Branzei,et al. Building up and breaking down: mechanisms controlling recombination during replication , 2017, Critical reviews in biochemistry and molecular biology.
[14] Stephan Uphoff,et al. Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli , 2016, Nature Communications.
[15] M. Cox,et al. Escherichia coli RadD Protein Functionally Interacts with the Single-stranded DNA-binding Protein* , 2016, The Journal of Biological Chemistry.
[16] R. Fuchs. Tolerance of lesions in E. coli: Chronological competition between Translesion Synthesis and Damage Avoidance. , 2016, DNA repair.
[17] T. Paz-Elizur,et al. High-resolution genomic assays provide insight into the division of labor between TLS and HDR in mammalian replication of damaged DNA. , 2016, DNA repair.
[18] J. Loparo,et al. Exchange between Escherichia coli polymerases II and III on a processivity clamp , 2015, Nucleic acids research.
[19] C. Myers,et al. Genetic Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing , 2015, PLoS genetics.
[20] Antoine M. van Oijen,et al. Regulation of Mutagenic DNA Polymerase V Activation in Space and Time , 2015, PLoS genetics.
[21] M. Cox,et al. Escherichia coli radD (yejH) gene: a novel function involved in radiation resistance and double‐strand break repair , 2015, Molecular microbiology.
[22] H. Kaur,et al. Top3-Rmi1 DNA single-strand decatenase is integral to the formation and resolution of meiotic recombination intermediates. , 2015, Molecular cell.
[23] Joseph T. P. Yeeles,et al. Replisome-mediated Translesion Synthesis and Leading Strand Template Lesion Skipping Are Competing Bypass Mechanisms* , 2014, The Journal of Biological Chemistry.
[24] F. Ochsenbein,et al. The Chromatin Assembly Factor 1 Promotes Rad51-Dependent Template Switches at Replication Forks by Counteracting D-Loop Disassembly by the RecQ-Type Helicase Rqh1 , 2014, PLoS biology.
[25] Cindy Follonier,et al. Visualization of recombination–mediated damage-bypass by template switching , 2014, Nature Structural &Molecular Biology.
[26] Joseph T. P. Yeeles,et al. Regression of Replication Forks Stalled by Leading-strand Template Damage , 2014, The Journal of Biological Chemistry.
[27] Michael M. Cox,et al. Escherichia coli Genes and Pathways Involved in Surviving Extreme Exposure to Ionizing Radiation , 2014, Journal of bacteriology.
[28] H. Maki,et al. DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts , 2014, Nucleic acids research.
[29] Heejun Choi,et al. Nonperturbative Imaging of Nucleoid Morphology in Live Bacterial Cells during an Antimicrobial Peptide Attack , 2014, Applied and Environmental Microbiology.
[30] J. Loparo,et al. Polymerase exchange on single DNA molecules reveals processivity clamp control of translesion synthesis , 2014, Proceedings of the National Academy of Sciences.
[31] A. Kuzminov. The Precarious Prokaryotic Chromosome , 2014, Journal of bacteriology.
[32] A. Sarasin,et al. Gap-filling and bypass at the replication fork are both active mechanisms for tolerance of low-dose ultraviolet-induced DNA damage in the human genome. , 2014, DNA repair.
[33] L. Bočkor,et al. Comparison of Intraplasmid Rearrangements in Agrobacterium tumefaciens and Escherichia coli , 2013 .
[34] R. Woodgate,et al. Translesion DNA polymerases. , 2013, Cold Spring Harbor perspectives in biology.
[35] Zhihao Zhuang,et al. Regulatory role of ubiquitin in eukaryotic DNA translesion synthesis. , 2013, Biochemistry.
[36] P. Pasero,et al. Rescuing stalled or damaged replication forks. , 2013, Cold Spring Harbor perspectives in biology.
[37] A. Carattoli,et al. Tandem multiplication of the IS26-flanked amplicon with the bla(SHV-5) gene within plasmid p1658/97. , 2013, FEMS microbiology letters.
[38] S. Boiteux,et al. DNA Repair Mechanisms and the Bypass of DNA Damage in Saccharomyces cerevisiae , 2013, Genetics.
[39] P. Sung,et al. Role of Replication Protein A in Double Holliday Junction Dissolution Mediated by the BLM-Topo IIIα-RMI1-RMI2 Protein Complex* , 2013, The Journal of Biological Chemistry.
[40] Yun-Jaie Choi,et al. Antibacterial properties of a pre-formulated recombinant phage endolysin, SAL-1. , 2013, International journal of antimicrobial agents.
[41] Yiguang Jin,et al. A multifunctional in situ–forming hydrogel for wound healing , 2012, Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society.
[42] B. Michel,et al. Replication Fork Reversal after Replication–Transcription Collision , 2012, PLoS genetics.
[43] A. Kuzminov,et al. Replication Forks Stalled at Ultraviolet Lesions Are Rescued via RecA and RuvABC Protein-catalyzed Disintegration in Escherichia coli* , 2011, The Journal of Biological Chemistry.
[44] N. de Wind,et al. DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity , 2011, Nucleic acids research.
[45] P. Plevani,et al. Mind the gap: Keeping UV lesions in check , 2011, DNA repair.
[46] H. Pospiech,et al. In Vitro Gap-directed Translesion DNA Synthesis of an Abasic Site Involving Human DNA Polymerases ϵ, λ, and β* , 2011, The Journal of Biological Chemistry.
[47] O. Sliusarenko,et al. High‐throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio‐temporal dynamics , 2011, Molecular microbiology.
[48] S. Lovett,et al. Toxicity and tolerance mechanisms for azidothymidine, a replication gap-promoting agent, in Escherichia coli. , 2011, DNA repair.
[49] W. Heyer,et al. Regulation of homologous recombination in eukaryotes. , 2010, Annual review of genetics.
[50] D. Branzei,et al. Replication and Recombination Factors Contributing to Recombination-Dependent Bypass of DNA Lesions by Template Switch , 2010, PLoS genetics.
[51] S. Kowalczykowski,et al. Rmi1 stimulates decatenation of double Holliday junctions during dissolution by Sgs1–Top3 , 2010, Nature Structural &Molecular Biology.
[52] Q. Ping,et al. New method for ophthalmic delivery of azithromycin by poloxamer/carbopol-based in situ gelling system , 2010, Drug delivery.
[53] T. Kelly,et al. Postreplication gaps at UV lesions are signals for checkpoint activation , 2010, Proceedings of the National Academy of Sciences.
[54] Z. Livneh,et al. Multiple two-polymerase mechanisms in mammalian translesion DNA synthesis , 2010, Cell cycle.
[55] N. Costantino,et al. Oligonucleotide recombination in Gram‐negative bacteria , 2010, Molecular microbiology.
[56] N. de Wind,et al. Mammalian polymerase zeta is essential for post-replication repair of UV-induced DNA lesions. , 2009, DNA repair.
[57] Diarmaid Hughes,et al. Gene amplification and adaptive evolution in bacteria. , 2009, Annual review of genetics.
[58] Z. Livneh,et al. Repair of gaps opposite lesions by homologous recombination in mammalian cells , 2009, Nucleic acids research.
[59] Mary Ellen Wiltrout,et al. Eukaryotic Translesion Polymerases and Their Roles and Regulation in DNA Damage Tolerance , 2009, Microbiology and Molecular Biology Reviews.
[60] J. Sale,et al. PCNA ubiquitination and REV1 define temporally distinct mechanisms for controlling translesion synthesis in the avian cell line DT40. , 2008, Molecular cell.
[61] B. Michel,et al. Recombination proteins and rescue of arrested replication forks. , 2007, DNA repair.
[62] R. G. Lloyd,et al. Replication fork stalling and cell cycle arrest in UV-irradiated Escherichia coli. , 2007, Genes & development.
[63] S. Mirkin,et al. Replication Fork Stalling at Natural Impediments , 2007, Microbiology and Molecular Biology Reviews.
[64] S. Lovett,et al. RecA-independent recombination is efficient but limited by exonucleases , 2007, Proceedings of the National Academy of Sciences.
[65] A. Lehmann,et al. Gaps and forks in DNA replication: Rediscovering old models. , 2006, DNA repair.
[66] I. Callebaut,et al. ATP Hydrolysis Is Essential for the Function of the Uup ATP-binding Cassette ATPase in Precise Excision of Transposons* , 2006, Journal of Biological Chemistry.
[67] S. Lovett,et al. DNA repeat rearrangements mediated by DnaK-dependent replication fork repair. , 2006, Molecular cell.
[68] M. Lopes,et al. Multiple mechanisms control chromosome integrity after replication fork uncoupling and restart at irreparable UV lesions. , 2006, Molecular cell.
[69] M. Foiani,et al. The DNA damage response during DNA replication. , 2005, Current opinion in cell biology.
[70] John R. Battista,et al. Deinococcus radiodurans — the consummate survivor , 2005, Nature Reviews Microbiology.
[71] J. Keck,et al. The HRDC domain of BLM is required for the dissolution of double Holliday junctions , 2005, The EMBO journal.
[72] S. Lovett. Filling the gaps in replication restart pathways. , 2005, Molecular cell.
[73] B. Michel,et al. Multiple pathways process stalled replication forks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[74] J. Courcelle,et al. When replication travels on damaged templates: bumps and blocks in the road. , 2004, Research in microbiology.
[75] B. Michel,et al. Requirement for RecFOR‐mediated recombination in priA mutant , 2004, Molecular microbiology.
[76] Ian D. Hickson,et al. The Bloom's syndrome helicase suppresses crossing over during homologous recombination , 2003, Nature.
[77] J. Courcelle,et al. RecA-dependent recovery of arrested DNA replication forks. , 2003, Annual review of genetics.
[78] R. Fuchs,et al. Uncoupling of Leading- and Lagging-Strand DNA Replication During Lesion Bypass in Vivo , 2003, Science.
[79] M. Cox,et al. C-terminal Deletions of the Escherichia coli RecA Protein , 2003, The Journal of Biological Chemistry.
[80] J. Courcelle,et al. DNA Damage-Induced Replication Fork Regression and Processing in Escherichia coli , 2003, Science.
[81] M. Cox. The nonmutagenic repair of broken replication forks via recombination. , 2002, Mutation research.
[82] S. Lovett,et al. Crossing over between regions of limited homology in Escherichia coli. RecA-dependent and RecA-independent pathways. , 2002, Genetics.
[83] A. Kuzminov. Single-strand interruptions in replicating chromosomes cause double-strand breaks , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[84] M. Cox,et al. RecA protein promotes the regression of stalled replication forks in vitro , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[85] R. G. Lloyd,et al. Formation of Holliday junctions by regression of nascent DNA in intermediates containing stalled replication forks: RecG stimulates regression even when the DNA is negatively supercoiled , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[86] M. Cox. Historical overview: Searching for replication help in all of the rec places , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[87] R. Larossa,et al. A genomic approach to gene fusion technology , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[88] B. Wanner,et al. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[89] B. Michel. Replication fork arrest and DNA recombination. , 2000, Trends in biochemical sciences.
[90] Myron F. Goodman,et al. The importance of repairing stalled replication forks , 2000, Nature.
[91] S. Lovett,et al. Expansion of DNA repeats in Escherichia coli: effects of recombination and replication functions. , 1999, Journal of molecular biology.
[92] M. Cox. A broadening view of recombinational DNA repair in bacteria , 1998, Genes to cells : devoted to molecular & cellular mechanisms.
[93] M. Cox,et al. Recombinational DNA Repair: The RecF and RecR Proteins Limit the Extension of RecA Filaments beyond Single-Strand DNA Gaps , 1997, Cell.
[94] M. Cox,et al. Convenient and reversible site-specific targeting of exogenous DNA into a bacterial chromosome by use of the FLP recombinase: the FLIRT system , 1997, Journal of bacteriology.
[95] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[96] S. Lovett,et al. Enhanced deletion formation by aberrant DNA replication in Escherichia coli. , 1997, Genetics.
[97] B. Michel,et al. DNA double‐strand breaks caused by replication arrest , 1997, The EMBO journal.
[98] L. Liu,et al. A replicational model for DNA recombination between direct repeats. , 1996, Journal of molecular biology.
[99] S. Lovett,et al. Recombination between repeats in Escherichia coli by a recA-independent, proximity-sensitive mechanism , 1994, Molecular and General Genetics MGG.
[100] T. C. Wang,et al. Involvement of RecF pathway recombination genes in postreplication repair in UV-irradiated Escherichia coli cells. , 1994, Mutation research.
[101] E. Dervyn,et al. Frequency of deletion formation decreases exponentially with distance between short direct repeats , 1994, Molecular microbiology.
[102] L. Liu,et al. recA-independent and recA-dependent intramolecular plasmid recombination. Differential homology requirement and distance effect. , 1994, Journal of molecular biology.
[103] S. Lovett,et al. A sister-strand exchange mechanism for recA-independent deletion of repeated DNA sequences in Escherichia coli. , 1993, Genetics.
[104] B. Van Houten,et al. Mechanism of action of the Escherichia coli UvrABC nuclease: Clues to the damage recognition problem , 1993, BioEssays : news and reviews in molecular, cellular and developmental biology.
[105] G. Dianov,et al. Molecular mechanisms of deletion formation in Escherichia coli plasmids , 1991, Molecular and General Genetics MGG.
[106] M. Cox,et al. DNA recognition by the FLP recombinase of the yeast 2 mu plasmid. A mutational analysis of the FLP binding site. , 1988, Journal of molecular biology.
[107] T. C. Wang,et al. recA (Srf) suppression of recF deficiency in the postreplication repair of UV-irradiated Escherichia coli K-12 , 1986, Journal of bacteriology.
[108] K. Smith,et al. recF-dependent and recF recB-independent DNA gap-filling repair processes transfer dimer-containing parental strands to daughter strands in Escherichia coli K-12 uvrB , 1984, Journal of bacteriology.
[109] T. C. Wang,et al. Mechanisms for recF-dependent and recB-dependent pathways of postreplication repair in UV-irradiated Escherichia coli uvrB , 1983, Journal of bacteriology.
[110] A. Sancar,et al. A novel repair enzyme: UVRABC excision nuclease of Escherichia coli cuts a DNA strand on both sides of the damaged region , 1983, Cell.
[111] M. Syvanen,et al. New class of mutations in Escherichia coli (uup) that affect precise excision of insertion elements and bacteriophage Mu growth , 1983, Journal of bacteriology.
[112] A. Clark,et al. Defective excision and postreplication repair of UV-damaged DNA in a recL mutant strain of E. coli K-12 , 1977, Molecular and General Genetics MGG.
[113] A. Clark,et al. The dependence of postreplication repair on uvrB in a recF mutant of Escherichia coli K-12 , 1977, Molecular and General Genetics MGG.
[114] K. Smith,et al. Genetic control of multiple pathways of post-replicational repair in uvrB strains of Escherichia coli K-12 , 1976, Journal of bacteriology.
[115] S. Sedgwick. Genetic and kinetic evidence for different types of postreplication repair in Escherichia coli B , 1975, Journal of bacteriology.
[116] C. Wilde,et al. Exchanges between DNA strands in ultraviolet-irradiated Escherichia coli. , 1971, Journal of molecular biology.
[117] B. Low,et al. Genetic Location of Certain Mutations Conferring Recombination Deficiency in Escherichia coli , 1969, Journal of bacteriology.
[118] P. Howard-Flanders,et al. Discontinuities in the DNA synthesized in an excision-defective strain of Escherichia coli following ultraviolet irradiation. , 1968, Journal of molecular biology.
[119] C. A. Coulson,et al. The distribution of the numbers of mutants in bacterial populations , 1949, Journal of Genetics.
[120] M. O’Donnell,et al. A proposal: Source of single strand DNA that elicits the SOS response. , 2013, Frontiers in bioscience.
[121] J. Repar,et al. Accuracy of genome reassembly in γ-irradiated Escherichia coli. , 2013 .
[122] O. Hyrien. Mechanisms and consequences of replication fork arrest. , 2000, Biochimie.
[123] J. Steitz,et al. Identification of a sex-factor-affinity site in E. coli as gamma delta. , 1981, Cold Spring Harbor symposia on quantitative biology.
[124] P C Hanawalt,et al. DNA repair in bacteria and mammalian cells. , 1979, Annual review of biochemistry.
[125] P. Howard-Flanders. Repair by genetic recombination in bacteria: overview. , 1975, Basic life sciences.
[126] B. Wilkins,et al. DNA replication and recombination after UV irradiation. , 1968, Cold Spring Harbor symposia on quantitative biology.