Genomic analysis of Anderson typing phages of Salmonella Typhimrium: towards understanding the basis of bacteria-phage interaction
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[1] S. Casjens,et al. Hybrid Vigor: Importance of Hybrid λ Phages in Early Insights in Molecular Biology , 2022, Microbiology and molecular biology reviews : MMBR.
[2] S. Casjens,et al. The small genome, virulent, non-contractile tailed bacteriophages that infect Enterobacteriales hosts. , 2022, Virology.
[3] Evelien M. Adriaenssens,et al. Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation , 2021, PHAGE.
[4] Martha R. J. Clokie,et al. INfrastructure for a PHAge REference Database: Identification of Large-Scale Biases in the Current Collection of Cultured Phage Genomes. , 2021, PHAGE.
[5] A. Toussaint,et al. PHROG: families of prokaryotic virus proteins clustered using remote homology , 2021, NAR genomics and bioinformatics.
[6] B. Orzechowska,et al. Characterisation of Phage Susceptibility Variation in Salmonella enterica Serovar Typhimurium DT104 and DT104b , 2021, Microorganisms.
[7] Cameron L.M. Gilchrist,et al. clinker & clustermap.js: Automatic generation of gene cluster comparison figures , 2020, bioRxiv.
[8] G. Węgrzyn,et al. Bacteriophages vB_Sen-TO17 and vB_Sen-E22, Newly Isolated Viruses from Chicken Feces, Specific for Several Salmonella enterica Strains , 2020, International journal of molecular sciences.
[9] S. Casjens,et al. Genome analysis of Salmonella enterica serovar Typhimurium bacteriophage L, indicator for StySA (StyLT2III) restriction-modification system action , 2020, bioRxiv.
[10] S. Casjens,et al. Genome Sequence of Salmonella enterica Serovar Typhimurium Bacteriophage MG40 , 2020, Microbiology Resource Announcements.
[11] A. Kropinski,et al. VIRIDIC—A Novel Tool to Calculate the Intergenomic Similarities of Prokaryote-Infecting Viruses , 2020, bioRxiv.
[12] M. Mohammed,et al. Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis , 2020, One Health Outlook.
[13] M. Vignaud,et al. Whole-Genome Sequences of Two Salmonella enterica Serovar Dublin Strains That Harbor the viaA, viaB, and ompB Loci of the Vi Antigen , 2019, Microbiology Resource Announcements.
[14] Jun Liu,et al. Structural dynamics of bacteriophage P22 infection initiation revealed by cryo-electron tomography , 2019, Nature Microbiology.
[15] M. Vignaud,et al. Draft Genome Sequences of Salmonella enterica subsp. enterica Serovar Dublin Strains from St. Nectaire and Morbier Cheeses Characterized by Multilocus Variable-Number Tandem-Repeat Analysis Profiles Associated with Two Fatal Outbreaks in France , 2019, Microbiology Resource Announcements.
[16] Christina Backes,et al. PLSDB: a resource of complete bacterial plasmids , 2018, Nucleic Acids Res..
[17] Daniel Gautheret,et al. CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins , 2018, Nucleic Acids Res..
[18] M. Mohammed. Phage typing or CRISPR typing for epidemiological surveillance of Salmonella Typhimurium? , 2017, BMC Research Notes.
[19] P. Leekitcharoenphon,et al. The invasome of Salmonella Dublin as revealed by whole genome sequencing , 2017, BMC Infectious Diseases.
[20] S. Casjens,et al. Contributions of P2- and P22-like prophages to understanding the enormous diversity and abundance of tailed bacteriophages. , 2016, Virology.
[21] B. Koskella,et al. Assessing Illumina technology for the high-throughput sequencing of bacteriophage genomes , 2016, PeerJ.
[22] David S. Wishart,et al. PHASTER: a better, faster version of the PHAST phage search tool , 2016, Nucleic Acids Res..
[23] M. Cormican,et al. Whole genome sequencing provides insights into the genetic determinants of invasiveness in Salmonella Dublin , 2016, Epidemiology and Infection.
[24] M. Cormican,et al. Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak , 2015, BMC Research Notes.
[25] J. Crump,et al. A Perspective on Invasive Salmonella Disease in Africa. , 2015, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[26] M. Cormican,et al. Whole genome sequencing provides an unambiguous link between Salmonella Dublin outbreak strain and a historical isolate , 2015, Epidemiology and Infection.
[27] Andrew J. Page,et al. Roary: rapid large-scale prokaryote pan genome analysis , 2015, bioRxiv.
[28] R. Barrangou,et al. Characterization and evolution of Salmonella CRISPR-Cas systems. , 2015, Microbiology.
[29] Christina A. Cuomo,et al. Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement , 2014, PloS one.
[30] S. Casjens,et al. Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae. , 2014, Virology.
[31] M. Touchon,et al. Pervasive domestication of defective prophages by bacteria , 2014, Proceedings of the National Academy of Sciences.
[32] Hyunjin Yoon,et al. Genomic Investigation of Lysogen Formation and Host Lysis Systems of the Salmonella Temperate Bacteriophage SPN9CC , 2013, Applied and Environmental Microbiology.
[33] Nicholas A Feasey,et al. Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa , 2012, The Lancet.
[34] Philippe Horvath,et al. CRISPR: new horizons in phage resistance and strain identification. , 2012, Annual review of food science and technology.
[35] S. Casjens,et al. Evolution of mosaically related tailed bacteriophage genomes seen through the lens of phage P22 virion assembly. , 2011, Virology.
[36] P. Carter,et al. The evolution and distribution of phage ST160 within Salmonella enterica serotype Typhimurium , 2010, Epidemiology and Infection.
[37] E. Nielsen,et al. Phage typing of Salmonella Typhimurium - is it still a useful tool for surveillance and outbreak investigation? , 2010, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[38] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[39] Thomas Rattei,et al. Gepard: a rapid and sensitive tool for creating dotplots on genome scale , 2007, Bioinform..
[40] M. Wiedmann,et al. Antimicrobial resistance in nontyphoidal Salmonella. , 2007, Journal of food protection.
[41] C. Georgopoulos. Toothpicks, Serendipity and the Emergence of the Escherichia coli DnaK (Hsp70) and GroEL (Hsp60) Chaperone Machines , 2006, Genetics.
[42] S. Casjens,et al. The Generalized Transducing Salmonella Bacteriophage ES18: Complete Genome Sequence and DNA Packaging Strategy , 2005, Journal of bacteriology.
[43] Michael William Heuzenroeder,et al. Bacteriophage ST64B, a Genetic Mosaic of Genes from Diverse Sources Isolated from Salmonella enterica Serovar Typhimurium DT 64 , 2003, Journal of bacteriology.
[44] J. Heitman,et al. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. , 2003, Nucleic acids research.
[45] R. Wilson,et al. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 , 2001, Nature.
[46] V. Braun,et al. FhuA Barrel-Cork Hybrids Are Active Transporters and Receptors , 2001, Journal of bacteriology.
[47] L. Bossi,et al. Inducible prophages contribute to Salmonella virulence in mice , 1999, Molecular microbiology.
[48] H. Schmieger. Molecular Survey of the Salmonella Phage Typing System of Anderson , 1999, Journal of bacteriology.
[49] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[50] S. Steinbacher,et al. Interactions of phage P22 tails with their cellular receptor, Salmonella O-antigen polysaccharide. , 1996, Biophysical Journal.
[51] S. Brenner,et al. Lambda foo: a lambda phage vector for the expression of foreign proteins. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[52] C. Miller,et al. Oligopeptidase A is required for normal phage P22 development , 1992, Journal of bacteriology.
[53] B. Rowe,et al. Acquisition of a drug resistance plasmid converts Salmonella enteritidis phage type 4 to phage type 24 , 1989, Epidemiology and Infection.
[54] I. Herskowitz,et al. Interactions of bacteriophage and host macromolecules in the growth of bacteriophage lambda , 1984 .
[55] D. Botstein,et al. Molecular genetics of bacteriophage P22 , 1978 .
[56] E. S. Anderson,et al. Bacteriophage-typing designations of Salmonella typhimurium , 1977, Journal of Hygiene.
[57] T. Kuo,et al. ES18, a general transducing phage for smooth and nonsmooth Salmonella typhimurium. , 1970, Virology.
[58] B. R. Callow. A new phage-typing scheme for Salmonella typhi-murium , 1959, Journal of Hygiene.
[59] A. Felix,et al. Typing of Paratyphoid B Bacilli by Vi Bacteriophage* , 1943, British medical journal.
[60] R. Young,et al. Phage Lysis: Multiple Genes for Multiple Barriers. , 2019, Advances in virus research.
[61] M. Cormican,et al. Characterization of bacteriophages used in the Salmonella enterica serovar Enteritidis phage-typing scheme. , 2009, Journal of medical microbiology.
[62] Peer Bork,et al. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation , 2007, Bioinform..
[63] W. Rabsch. Salmonella typhimurium phage typing for pathogens. , 2007, Methods in molecular biology.
[64] S. Douglas. DNA Strider. A Macintosh program for handling protein and nucleic acid sequences. , 1994, Methods in molecular biology.
[65] A. Felix,et al. Typing of Paratyphoid B Bacilli by means of Vi Baeterio-phage. , 1943 .