Geostatistical modelling of regional bird species richness: exploring environmental proxies for conservation purpose

Identifying spatial patterns in species diversity represents an essential task to be accounted for when establishing conservation strategies or monitoring programs. Predicting patterns of species richness by a model-based approach has recently been recognised as a significant component of conservation planning. Finding those environmental predictors which are related to these patterns is crucial since they may represent surrogates of biodiversity, indicating in a fast and cheap way the spatial location of biodiversity hotspots and, consequently, where conservation efforts should be addressed. Predictive models based on classical multiple linear regression or generalised linear models crowded the recent ecological literature. However, very often, problems related with spatial autocorrelation in observed data were not adequately considered. Here, a spatially-explicit data-set on birds presence and distribution across the whole Tuscany region was analysed. Species richness was calculated within 1 × 1 km grid cells and 10 environmental predictors (e.g. altitude, habitat diversity and satellite-derived landscape heterogeneity indices) were included in the analysis. Integrating spatial components of variation with predictive ecological factors, i.e. using geostatistical models, a general model of bird species richness was developed and used to obtain predictive regional maps of bird diversity hotspots. A meaningful subset of environmental predictors, namely habitat productivity, habitat heterogeneity, combined with topographic and geographic information, were included in the final geostatistical model. Conservation strategies based on the predicted hotspots as well as directions for increasing sampling effort efficiency could be extrapolated by the proposed model.

[1]  D. Rocchini,et al.  Explicitly Accounting for Pixel Dimension in Calculating Classical and Fractal Landscape Shape Metrics , 2009, Acta biotheoretica.

[2]  R. Whittaker Evolution and measurement of species diversity , 1972 .

[3]  D. Pearson,et al.  SPATIAL MODELING OF BUTTERFLY SPECIES RICHNESS USING TIGER BEETLES (CICINDELIDAE) AS A BIOINDICATOR TAXON , 1998 .

[4]  D. Cox,et al.  An Analysis of Transformations , 1964 .

[5]  J. Clobert,et al.  Advantages of Volunteer‐Based Biodiversity Monitoring in Europe , 2009, Conservation biology : the journal of the Society for Conservation Biology.

[6]  L. Belbin,et al.  Evaluation of statistical models used for predicting plant species distributions: Role of artificial data and theory , 2006 .

[7]  C. Rahbek,et al.  Geographic Range Size and Determinants of Avian Species Richness , 2002, Science.

[8]  Mark P. Robertson,et al.  Getting the most out of atlas data , 2010 .

[9]  P. Legendre Spatial Autocorrelation: Trouble or New Paradigm? , 1993 .

[10]  D. Pearson,et al.  The influence of spatial scale on cross‐taxon congruence patterns and prediction accuracy of species richness , 1999 .

[11]  N. Cressie The origins of kriging , 1990 .

[12]  Antoine Guisan,et al.  Predictive habitat distribution models in ecology , 2000 .

[13]  M. Araújo,et al.  Five (or so) challenges for species distribution modelling , 2006 .

[14]  D. Massimino,et al.  A Multiscale Method for Selecting Indicator Species and Priority Conservation Areas: a Case Study for Broadleaved Forests in Lombardy, Italy , 2006, Conservation biology : the journal of the Society for Conservation Biology.

[15]  Sunil Kumar,et al.  Spatial heterogeneity influences native and nonnative plant species richness. , 2006, Ecology.

[16]  Jennifer A Hoeting,et al.  Model selection for geostatistical models. , 2006, Ecological applications : a publication of the Ecological Society of America.

[17]  H. Nagendra,et al.  High resolution satellite imagery for tropical biodiversity studies: the devil is in the detail , 2008, Biodiversity and Conservation.

[18]  Trevor Hastie,et al.  Generalized linear and generalized additive models in studies of species distributions: setting the scene , 2002 .

[19]  D. Rocchini,et al.  The role of regional and local scale predictors for plant species richness in Mediterranean forests , 2008 .

[20]  Paul H. Williams,et al.  The role of transitional areas as avian biodiversity centres , 2006 .

[21]  A. Skidmore,et al.  Interannual variability of NDVI and species richness in Kenya , 2002 .

[22]  P. Diggle,et al.  Model‐based geostatistics , 2007 .

[23]  T. Kitzberger,et al.  Environmental correlates of mammal species richness in South America: effects of spatial structure, taxonomy and geographic range , 2004 .

[24]  Paul H. Williams,et al.  Measuring more of biodiversity: Can higher-taxon richness predict wholesale species richness? , 1994 .

[25]  J. Lobo,et al.  A synecological framework for systematic conservation planning , 2006 .

[26]  Duccio Rocchini,et al.  Discovering and rediscovering the sample-based rarefaction formula in the ecological literature , 2008 .

[27]  L. Brennan,et al.  The Habitat Concept in Ornithology , 1993 .

[28]  W. Jetz,et al.  Global patterns and determinants of vascular plant diversity , 2007, Proceedings of the National Academy of Sciences.

[29]  B. Huntley,et al.  Potential impacts of climatic change on the breeding and non‐breeding ranges and migration distance of European Sylvia warblers , 2009 .

[30]  John L. Harper,et al.  Ecology from individuals to ecosystems 4th ed. , 2008 .

[31]  Markus Neteler,et al.  Remotely sensed spectral heterogeneity as a proxy of species diversity: Recent advances and open challenges , 2010, Ecol. Informatics.

[32]  Timothy C. Coburn,et al.  Geostatistics for Natural Resources Evaluation , 2000, Technometrics.

[33]  Ingolf Kühn,et al.  Incorporating spatial autocorrelation may invert observed patterns , 2006 .

[34]  D. Dalthorp The generalized linear model for spatial data: assessing the effects of environmental covariates on population density in the field , 2004 .

[35]  M. Gilbert,et al.  Species richness coincidence: conservation strategies based on predictive modelling , 2005, Biodiversity & Conservation.

[36]  Carsten Rahbek,et al.  Predicting continental-scale patterns of bird species richness with spatially explicit models , 2007, Proceedings of the Royal Society B: Biological Sciences.

[37]  T. Koellner,et al.  Rarefaction method for assessing plant species diversity on a regional scale , 2004 .

[38]  Vassiliki Kati,et al.  Testing the Value of Six Taxonomic Groups as Biodiversity Indicators at a Local Scale , 2004 .

[39]  Giles M. Foody,et al.  Tree biodiversity in protected and logged Bornean tropical rain forests and its measurement by satellite remote sensing , 2003 .

[40]  A. Solow,et al.  The value of information in reserve site selection , 2001, Biodiversity & Conservation.

[41]  R L Pressey,et al.  Beyond opportunism: Key principles for systematic reserve selection. , 1993, Trends in ecology & evolution.

[42]  Kate S. He,et al.  Linking variability in species composition and MODIS NDVI based on beta diversity measurements , 2009 .

[43]  J. Nocedal,et al.  A Limited Memory Algorithm for Bound Constrained Optimization , 1995, SIAM J. Sci. Comput..

[44]  J. Lawton,et al.  Rare species, the coincidence of diversity hotspots and conservation strategies , 1993, Nature.

[45]  G. Matheron Principles of geostatistics , 1963 .

[46]  Atte Moilanen,et al.  Combining probabilities of occurrence with spatial reserve design , 2004 .

[47]  C. Tucker,et al.  NASA’s Global Orthorectified Landsat Data Set , 2004 .

[48]  Alessandro Chiarucci,et al.  Using taxonomic data to assess and monitor biodiversity: are the tribes still fighting? , 2009, Journal of environmental monitoring : JEM.

[49]  Neil D. Burgess,et al.  Bird Census Techniques , 1992 .

[50]  C. Ricotta,et al.  Accounting for uncertainty when mapping species distributions: The need for maps of ignorance , 2011 .

[51]  Martin L. Cody,et al.  Habitat selection in birds , 1986 .

[52]  S. Kobayashi,et al.  The species-area relation I. A model for discrete sampling , 2006, Researches on Population Ecology.

[53]  J. Paruelo,et al.  How to evaluate models : Observed vs. predicted or predicted vs. observed? , 2008 .

[54]  J. Fox,et al.  Applied Regression Analysis and Generalized Linear Models , 2008 .

[55]  Wesley M. Hochachka,et al.  Monitoring vertebrate populations using observational data , 2000 .

[56]  Arno Thomaes,et al.  Applying species distribution modelling for the conservation of the threatened saproxylic Stag Beetle (Lucanus cervus) , 2008 .

[57]  P. White,et al.  The distance decay of similarity in biogeography and ecology , 1999 .

[58]  J. Greenwood,et al.  Contribution of rarity and commonness to patterns of species richness , 2003 .

[59]  Lars T. Waser,et al.  Prediction of biodiversity - regression of lichen species richness on remote sensing data , 2004 .

[60]  W. Gould REMOTE SENSING OF VEGETATION, PLANT SPECIES RICHNESS, AND REGIONAL BIODIVERSITY HOTSPOTS , 2000 .

[61]  D. Rocchini,et al.  Simple to sample: Vascular plants as surrogate group in a nature reserve , 2010 .

[62]  Harry F. Recher,et al.  On the Relation between Habitat Selection and Species Diversity , 1966, The American Naturalist.

[63]  D. Rocchini,et al.  Multi-scale sampling and statistical linear estimators to assess land use status and change , 2009 .

[64]  Richard Field,et al.  Predictions and tests of climate‐based hypotheses of broad‐scale variation in taxonomic richness , 2004 .

[65]  M. Begon,et al.  Ecology: From Individuals to Ecosystems , 2005 .

[66]  J. Lobo,et al.  TOWARDS A SYNECOLOGICAL FRAMEWORK FOR SYSTEMATIC CONSERVATION PLANNING , 2006 .

[67]  Thomas Wohlgemuth,et al.  Quantitative tools for perfecting species lists , 2002 .

[68]  S. D. Cooper,et al.  Quantifying Spatial Heterogeneity in Streams , 1997, Journal of the North American Benthological Society.

[69]  Jennifer A Hoeting,et al.  The importance of accounting for spatial and temporal correlation in analyses of ecological data. , 2009, Ecological applications : a publication of the Ecological Society of America.

[70]  D. Rocchini,et al.  Modelling factors affecting litter mass components of pine stands , 2007 .

[71]  Advanced Geostatistics in the Mining Industry. , 1977 .

[72]  E. Fleishman,et al.  Predicting Bird Species Distributions in Reconstructed Landscapes , 2007, Conservation biology : the journal of the Society for Conservation Biology.

[73]  Gary C. White,et al.  Monitoring Vertebrate Populations , 1998 .

[74]  Carlo Ricotta,et al.  A spatially explicit measure of beta diversity , 2007 .

[75]  H. Jactel,et al.  The spatial distribution of birds and carabid beetles in pine plantation forests: the role of landscape composition and structure , 2007 .

[76]  M. Ebach,et al.  What, Exactly, is Cladistics? Re-writing the History of Systematics and Biogeography , 2009, Acta biotheoretica.

[77]  R. Whittaker,et al.  GLOBAL MODELS FOR PREDICTING WOODY PLANT RICHNESS FROM CLIMATE: DEVELOPMENT AND EVALUATION , 2005 .

[78]  G. Bacaro,et al.  Congruence among vascular plants and butterflies in the evaluation of grassland restoration success , 2009 .

[79]  M. Nobis,et al.  Modelling vascular plant diversity at the landscape scale using systematic samples , 2008 .

[80]  D. Noble,et al.  The state of play of farmland birds: population trends and conservation status of lowland farmland birds in the United Kingdom , 2004 .

[81]  T. M. Lillesand,et al.  Remote Sensing and Image Interpretation , 1980 .

[82]  John Fox,et al.  Applied Regression Analysis and Generalized Linear Models , 2008 .

[83]  K. McGarigal,et al.  FRAGSTATS: spatial pattern analysis program for quantifying landscape structure. , 1995 .

[84]  D. G. Krige,et al.  A Review of the Development of Geostatistics in South Africa , 1976 .

[85]  L. Fattorini,et al.  Multi-stage cluster sampling for estimating average species richness at different spatial grains , 2007 .

[86]  M. Bossard,et al.  CORINE land cover technical guide - Addendum 2000 , 2000 .

[87]  G. Foody,et al.  Measuring and modelling biodiversity from space , 2008 .

[88]  Volker C. Radeloff,et al.  Satellite image texture and a vegetation index predict avian biodiversity in the Chihuahuan Desert of New Mexico , 2009 .

[89]  S. Goetz,et al.  Laser remote sensing of canopy habitat heterogeneity as a predictor of bird species richness in an eastern temperate forest, USA , 2006 .

[90]  Sovan Lek,et al.  Energy availability and habitat heterogeneity predict global riverine fish diversity , 1998, Nature.

[91]  R. Ohlemüller,et al.  Local vs regional factors as determinants of the invasibility of indigenous forest fragments by alien plant species , 2006 .

[92]  M. Austin Spatial prediction of species distribution: an interface between ecological theory and statistical modelling , 2002 .

[93]  S. Kark,et al.  Accurate prediction of bird species richness patterns in an urban environment using Landsat‐derived NDVI and spectral unmixing , 2008 .

[94]  John A. Nelder,et al.  A Simplex Method for Function Minimization , 1965, Comput. J..

[95]  R. Green,et al.  The effect of management for red grouse shooting on the population density of breeding birds on heather‐dominated moorland , 2001 .

[96]  Robert K. Colwell,et al.  Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness , 2001 .

[97]  Eduardo Pineda,et al.  Assessing the accuracy of species distribution models to predict amphibian species richness patterns. , 2009, The Journal of animal ecology.

[98]  K. McGwire,et al.  Patterns of floristic richness in vegetation communities of California: regional scale analysis with multi-temporal NDVI , 2004 .