Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine
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Barbara B. Shih | R. Dewhurst | C. Duthie | Robert D. Stewart | R. Roehe | R. Wallace | M. Auffret | J. Rooke | M. Martínez-Álvaro | Mick Watson | Tom. Freeman
[1] Mick Watson,et al. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery , 2019, Nature Biotechnology.
[2] X. Morgan,et al. Diverse hydrogen production and consumption pathways influence methane production in ruminants , 2019, The ISME Journal.
[3] Henrik Bjørn Nielsen,et al. Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows , 2018, PLoS genetics.
[4] R. Dewhurst,et al. Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future , 2018, Front. Microbiol..
[5] Michael Greenacre,et al. Compositional Data Analysis in Practice , 2018 .
[6] F. Madeo,et al. Microbial wars: Competition in ecological niches and within the microbiome , 2018, Microbial cell.
[7] Georgios A. Pavlopoulos,et al. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection , 2018, Nature Biotechnology.
[8] C. Joshi,et al. Microbiota composition, gene pool and its expression in Gir cattle (Bos indicus) rumen under different forage diets using metagenomic and metatranscriptomic approaches. , 2018, Systematic and applied microbiology.
[9] R. Dewhurst,et al. Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen , 2018, Nature Communications.
[10] M. Wagner,et al. Metatranscriptome Sequencing Reveals Insights into the Gene Expression and Functional Potential of Rumen Wall Bacteria , 2018, Front. Microbiol..
[11] Rhesa N Ledbetter,et al. A pathway for biological methane production using bacterial iron-only nitrogenase , 2018, Nature Microbiology.
[12] M. Kreuzer,et al. Contribution of Ruminal Fungi, Archaea, Protozoa, and Bacteria to the Methane Suppression Caused by Oilseed Supplemented Diets , 2017, Front. Microbiol..
[13] Donovan H. Parks,et al. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life , 2017, Nature Microbiology.
[14] Anders F. Andersson,et al. Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation , 2017, The ISME Journal.
[15] Scott T. Weiss,et al. Mapping the ecological networks of microbial communities , 2017, Nature Communications.
[16] Pan-Jun Kim,et al. Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis , 2017, Nature Communications.
[17] O. Ince,et al. Rumen anaerobic fungi create new opportunities for enhanced methane production from microalgae biomass , 2017 .
[18] H. Gonda,et al. Methane Production in Dairy Cows Correlates with Rumen Methanogenic and Bacterial Community Structure , 2017, Front. Microbiol..
[19] F. Strozzi,et al. The ruminal microbiome associated with methane emissions from ruminant livestock , 2017, Journal of Animal Science and Biotechnology.
[20] P. Saha,et al. Competition between Methanogens and Acetogens in Biocathodes: A Comparison between Potentiostatic and Galvanostatic Control , 2017, International journal of molecular sciences.
[21] E. Rubin,et al. Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation , 2016, Microbiome.
[22] Damian Szklarczyk,et al. The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible , 2016, Nucleic Acids Res..
[23] Donovan H. Parks,et al. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota , 2016, Nature Microbiology.
[24] Kun-Hong Lee,et al. Inhibition of methane and natural gas hydrate formation by altering the structure of water with amino acids , 2016, Scientific Reports.
[25] J. Skomiał,et al. The effect of rumen ciliates on chitinolytic activity, chitin content and the number of fungal zoospores in the rumen fluid of sheep , 2016, Archives of animal nutrition.
[26] J. Dijkstra,et al. Effect of dietary nitrate level on enteric methane production, hydrogen emission, rumen fermentation, and nutrient digestibility in dairy cows. , 2016, Journal of dairy science.
[27] B. White,et al. Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants , 2016, The ISME Journal.
[28] Mick Watson,et al. Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance , 2016, PLoS genetics.
[29] N. McEwan,et al. The Role of Ciliate Protozoa in the Rumen , 2015, Front. Microbiol..
[30] Mick Watson,et al. The rumen microbial metagenome associated with high methane production in cattle , 2015, BMC Genomics.
[31] P. B. Pope,et al. Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range , 2015, Scientific Reports.
[32] Tasia M. Taxis,et al. The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity , 2015, Nucleic acids research.
[33] A. Cherdthong,et al. Dietary sources and their effects on animal production and environmental sustainability , 2015, Animal nutrition.
[34] D. Pitta,et al. Associative patterns among anaerobic fungi, methanogenic archaea, and bacterial communities in response to changes in diet and age in the rumen of dairy cows , 2015, Front. Microbiol..
[35] F. Thompson,et al. Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review , 2015, PeerJ.
[36] J. Edwards,et al. Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential. , 2014, FEMS microbiology ecology.
[37] J. Hyslop,et al. Archaeal abundance in post-mortem ruminal digesta may help predict methane emissions from beef cattle , 2014, Scientific Reports.
[38] Dongwan D. Kang,et al. Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome , 2014, Genome research.
[39] J. Hyslop,et al. Hydrogen and methane emissions from beef cattle and their rumen microbial community vary with diet, time after feeding and genotype , 2014, British Journal of Nutrition.
[40] Derrick E. Wood,et al. Kraken: ultrafast metagenomic sequence classification using exact alignments , 2014, Genome Biology.
[41] S. Gribaldo,et al. Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis , 2013, Genome biology and evolution.
[42] Tsunglin Liu,et al. Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly , 2013, PloS one.
[43] A. Spang,et al. Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen , 2013, Nature Communications.
[44] Jonathan Friedman,et al. Inferring Correlation Networks from Genomic Survey Data , 2012, PLoS Comput. Biol..
[45] J. Raes,et al. Microbial interactions: from networks to models , 2012, Nature Reviews Microbiology.
[46] A. Schnürer,et al. Methanogenic Population and CH4 Production in Swedish Dairy Cows Fed Different Levels of Forage , 2012, Applied and Environmental Microbiology.
[47] T. Mcallister,et al. Relationship between rumen methanogens and methane production in dairy cows fed diets supplemented with a feed enzyme additive , 2011, Journal of applied microbiology.
[48] Noah Fierer,et al. Using network analysis to explore co-occurrence patterns in soil microbial communities , 2011, The ISME Journal.
[49] D. Morgavi,et al. Rumen protozoa and methanogenesis: not a simple cause–effect relationship , 2011, British Journal of Nutrition.
[50] S. Wiedemann,et al. Ruminant enteric methane mitigation: a review , 2011 .
[51] C. Martin,et al. Long-term defaunation increases the abundance of cellulolytic ruminococci and methanogens but does not affect the bacterial and methanogen diversity in the rumen of sheep. , 2011, Journal of animal science.
[52] P. Janssen. Influence of hydrogen on rumen methane formation and fermentation balances through microbial growth kinetics and fermentation thermodynamics , 2010 .
[53] C. Martin,et al. Microbial ecosystem and methanogenesis in ruminants. , 2010, Animal : an international journal of animal bioscience.
[54] William J. Kelly,et al. The Genome Sequence of the Rumen Methanogen Methanobrevibacter ruminantium Reveals New Possibilities for Controlling Ruminant Methane Emissions , 2010, PloS one.
[55] Anne-Kristin Kaster,et al. Methanogenic archaea: ecologically relevant differences in energy conservation , 2008, Nature Reviews Microbiology.
[56] Peter H. Janssen,et al. Structure of the Archaeal Community of the Rumen , 2008, Applied and Environmental Microbiology.
[57] Stijn van Dongen,et al. Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data , 2007, PLoS Comput. Biol..
[58] J. Hackstein,et al. The competitive success of Methanomicrococcus blatticola, a dominant methylotrophic methanogen in the cockroach hindgut, is supported by high substrate affinities and favorable thermodynamics. , 2007, FEMS microbiology ecology.
[59] Zhongtang Yu,et al. Improved extraction of PCR-quality community DNA from digesta and fecal samples. , 2004, BioTechniques.
[60] E. Forano,et al. Fiber-Degrading Systems of Different Strains of the Genus Fibrobacter , 2004, Applied and Environmental Microbiology.
[61] A. R. Moss,et al. Methane production by ruminants: its contribution to global warming , 2000 .
[62] T. May,et al. The Effect of a Methanogen, Methanobrevibacter smithii, on the Growth Rate, Organic Acid Production, and Specific ATP Activity of Three Predominant Ruminal Cellulolytic Bacteria , 2000, Current Microbiology.
[63] K. Ushida,et al. Methanogens associated with rumen ciliates , 1997 .
[64] D. Johnson,et al. Methane emissions from cattle. , 1995, Journal of animal science.
[65] D. Lloyd,et al. Oxygen consumption by ruminal microorganisms: protozoal and bacterial contributions , 1989, Applied and environmental microbiology.
[66] R. Dewhurst,et al. Identification, Comparison, and Validation of Robust Rumen Microbial Biomarkers for Methane Emissions Using Diverse Bos Taurus Breeds and Basal Diets , 2018 .
[67] M. Eugène,et al. Quantitative meta-analysis on the effects of defaunation of the rumen on growth, intake and digestion in ruminants , 2004 .
[68] U. S. Dairy. Manipulating Ruminal Fermentation : A Microbial Ecological Perspective , 1998 .