Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

[1]  Wei Li,et al.  High Resolution Consensus Mapping of Quantitative Trait Loci for Fiber Strength, Length and Micronaire on Chromosome 25 of the Upland Cotton (Gossypium hirsutum L.) , 2015, PloS one.

[2]  Zhendong Liu,et al.  Using specific length amplified fragment sequencing to construct the high-density genetic map for Vitis (Vitis vinifera L. × Vitis amurensis Rupr.) , 2015, Front. Plant Sci..

[3]  Hongkun Zheng,et al.  Large-Scale SNP Discovery and Genotyping for Constructing a High-Density Genetic Map of Tea Plant Using Specific-Locus Amplified Fragment Sequencing (SLAF-seq) , 2015, PloS one.

[4]  F. Cheng,et al.  The First High-Density Genetic Map Construction in Tree Peony (Paeonia Sect. Moutan) using Genotyping by Specific-Locus Amplified Fragment Sequencing , 2015, PloS one.

[5]  Yuzhen Shi,et al.  Constructing a high-density linkage map for Gossypium hirsutum × Gossypium barbadense and identifying QTLs for lint percentage. , 2015, Journal of integrative plant biology.

[6]  Lei Fang,et al.  Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement , 2015, Nature Biotechnology.

[7]  Tianzhen Zhang,et al.  Molecular Mapping of Restriction-Site Associated DNA Markers in Allotetraploid Upland Cotton , 2015, PloS one.

[8]  He Zhang,et al.  Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution , 2015, Nature Biotechnology.

[9]  Xiaocui Wang,et al.  Identification of stable QTLs controlling fiber traits properties in multi-environment using recombinant inbred lines in Upland cotton (Gossypium hirsutum L.) , 2015, Euphytica.

[10]  Xiaocui Wang,et al.  Identification of stable QTLs controlling fiber traits properties in multi-environment using recombinant inbred lines in Upland cotton (Gossypium hirsutum L.) , 2015, Euphytica.

[11]  Xueying Liu,et al.  Construction of a high-density genetic map and lint percentage and cottonseed nutrient trait QTL identification in upland cotton (Gossypium hirsutum L.) , 2015, Molecular Genetics and Genomics.

[12]  Qixiang Zhang,et al.  High-density genetic map construction and identification of a locus controlling weeping trait in an ornamental woody plant (Prunus mume Sieb. et Zucc) , 2015, DNA research : an international journal for rapid publication of reports on genes and genomes.

[13]  Qiang Xu,et al.  A high-density genetic map of cucumber derived from Specific Length Amplified Fragment sequencing (SLAF-seq) , 2015, Front. Plant Sci..

[14]  Jinfeng Chen,et al.  An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing , 2014, BMC Genomics.

[15]  Hongkun Zheng,et al.  Construction of a high-density genetic map based on large-scale markers developed by specific length amplified fragment sequencing (SLAF-seq) and its application to QTL analysis for isoflavone content in Glycine max , 2014, BMC Genomics.

[16]  Xiaowu Wang,et al.  Construction and Analysis of High-Density Linkage Map Using High-Throughput Sequencing Data , 2014, PloS one.

[17]  Xun Xu,et al.  Genome sequence of the cultivated cotton Gossypium arboreum , 2014, Nature Genetics.

[18]  Guiyin Zhang,et al.  Mapping QTL for cotton fiber quality traits using simple sequence repeat markers, conserved intron-scanning primers, and transcript-derived fragments , 2014, Euphytica.

[19]  Weili Yan,et al.  Inheritances and location of powdery mildew resistance gene in melon Edisto47 , 2014, Euphytica.

[20]  Linhai Wang,et al.  Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing , 2013, BMC Plant Biology.

[21]  W. Powell,et al.  Genotyping by RAD sequencing enables mapping of fatty acid composition traits in perennial ryegrass (Lolium perenne (L.)). , 2013, Plant biotechnology journal.

[22]  Dongyuan Liu,et al.  SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing , 2013, PloS one.

[23]  M. Gore,et al.  Identification of quantitative trait loci across interspecific F2, F2:3 and testcross populations for agronomic and fiber traits in tetraploid cotton , 2013, Euphytica.

[24]  Tianzhen Zhang,et al.  Molecular tagging of QTLs for fiber quality and yield in the upland cotton cultivar Acala-Prema , 2013, Euphytica.

[25]  John Z. Yu,et al.  The draft genome of a diploid cotton Gossypium raimondii , 2012, Nature Genetics.

[26]  G. Valè,et al.  A RAD Tag Derived Marker Based Eggplant Linkage Map and the Location of QTLs Determining Anthocyanin Pigmentation , 2012, PloS one.

[27]  Qian Qian,et al.  Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm , 2011, Nature Genetics.

[28]  Jiwen Yu,et al.  Mapping quantitative trait loci for lint yield and fiber quality across environments in a Gossypium hirsutum × Gossypium barbadense backcross inbred line population , 2012, Theoretical and Applied Genetics.

[29]  Zequn Zheng,et al.  Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L. , 2012, BMC Genomics.

[30]  Haihong Shang,et al.  QTL mapping for fiber quality traits across multiple generations and environments in upland cotton , 2012, Molecular Breeding.

[31]  Shiyi Tang,et al.  Genetic mapping and quantitative trait locus analysis of fiber quality traits using a three-parent composite population in upland cotton (Gossypium hirsutum L.) , 2012, Molecular Breeding.

[32]  Tianzhen Zhang,et al.  Quantitative trait loci mapping for yield and its components by using two immortalized populations of a heterotic hybrid in Gossypium hirsutum L. , 2012, Molecular Breeding.

[33]  S. Knapp,et al.  RAD tag sequencing as a source of SNP markers in Cynara cardunculus L , 2012, BMC Genomics.

[34]  J. V. Ooijen,et al.  Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species. , 2011 .

[35]  Robert J. Elshire,et al.  A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species , 2011, PloS one.

[36]  J. V. van Ooijen.  Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species. , 2011, Genetics research.

[37]  Zhao-Bang Zeng,et al.  Windows QTL Cartographer 2·5 , 2011 .

[38]  Patrick M Hayes,et al.  Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley , 2011, BMC Genomics.

[39]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[40]  P. Etter,et al.  Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers , 2008, PloS one.

[41]  Tianzhen Zhang,et al.  QTL mapping of yield and fiber traits based on a four-way cross population in Gossypium hirsutum L. , 2008, Theoretical and Applied Genetics.

[42]  Richard G. F. Visser,et al.  SMOOTH: a statistical method for successful removal of genotyping errors from high-density genetic linkage data , 2005, Theoretical and Applied Genetics.

[43]  John Z. Yu,et al.  Molecular mapping of QTLs for fiber qualities in three diverse lines in Upland cotton using SSR markers , 2005, Molecular Breeding.

[44]  J. A. Buso,et al.  BMC Plant Biology , 2003 .

[45]  J. Jansen,et al.  Constructing dense genetic linkage maps , 2001, Theoretical and Applied Genetics.

[46]  Z. Zeng.  Precision mapping of quantitative trait loci. , 1994, Genetics.

[47]  D. D. Kosambi.  The estimation of map distances from recombination values. , 1943 .