Winter Wheat Yield Prediction at County Level and Uncertainty Analysis in Main Wheat-Producing Regions of China with Deep Learning Approaches

Timely and accurate forecasting of crop yields is crucial to food security and sustainable development in the agricultural sector. However, winter wheat yield estimation and forecasting on a regional scale still remains challenging. In this study, we established a two-branch deep learning model to predict winter wheat yield in the main producing regions of China at the county level. The first branch of the model was constructed based on the Long Short-Term Memory (LSTM) networks with inputs from meteorological and remote sensing data. Another branch was constructed using Convolution Neural Networks (CNN) to model static soil features. The model was then trained using the detrended statistical yield data during 1982 to 2015 and evaluated by leave-one-year-out-validation. The evaluation results showed a promising performance of the model with the overall R2 and RMSE of 0.77 and 721 kg/ha, respectively. We further conducted yield prediction and uncertainty analysis based on the two-branch model and obtained the forecast accuracy in one month prior to harvest of 0.75 and 732 kg/ha. Results also showed that while yield detrending could potentially introduce higher uncertainty, it had the advantage of improving the model performance in yield prediction.

[1]  Jian Sun,et al.  Delving Deep into Rectifiers: Surpassing Human-Level Performance on ImageNet Classification , 2015, 2015 IEEE International Conference on Computer Vision (ICCV).

[2]  Peng Gao,et al.  Detrending crop yield data for spatial visualization of drought impacts in the United States, 1895–2014 , 2017 .

[3]  Claudia Notarnicola,et al.  Review of Machine Learning Approaches for Biomass and Soil Moisture Retrievals from Remote Sensing Data , 2015, Remote. Sens..

[4]  S. Quiring,et al.  An evaluation of agricultural drought indices for the Canadian prairies , 2003 .

[5]  Zhang Zha Spatio-temporal changes of agrometrorological disasters for wheat production across China since 1990 , 2013 .

[6]  Pierre-Majorique Léger,et al.  The early explanatory power of NDVI in crop yield modelling , 2008 .

[7]  M. Bindi,et al.  A simple model of regional wheat yield based on NDVI data , 2007 .

[8]  Zhonghu He,et al.  Wheat cropping systems and technologies in China , 2009 .

[9]  Stefano Ermon,et al.  Deep Transfer Learning for Crop Yield Prediction with Remote Sensing Data , 2018, COMPASS.

[10]  S. S. Sidhu,et al.  Pre-harvest wheat yield and production estimation for the Punjab, India , 1994 .

[11]  William J. Davies,et al.  An analysis of China's grain production: looking back and looking forward , 2014 .

[12]  Jim W. Hall,et al.  Assessing the Impacts of Extreme Agricultural Droughts in China Under Climate and Socioeconomic Changes , 2018 .

[13]  Shusen Wang,et al.  Crop yield forecasting on the Canadian Prairies using MODIS NDVI data , 2011 .

[14]  Kadambot H. M. Siddique,et al.  Wheat yield improvements in China: Past trends and future directions , 2015 .

[15]  Michael J. Roberts,et al.  Nonlinear Effects of Weather on Corn Yields , 2006 .

[16]  Kah Phooi Seng,et al.  Big data and machine learning for crop protection , 2018, Comput. Electron. Agric..

[17]  A. Kiureghian,et al.  Aleatory or epistemic? Does it matter? , 2009 .

[18]  B. Holben Characteristics of maximum-value composite images from temporal AVHRR data , 1986 .

[19]  Michael Dixon,et al.  Google Earth Engine: Planetary-scale geospatial analysis for everyone , 2017 .

[20]  Joachim Denzler,et al.  Deep learning and process understanding for data-driven Earth system science , 2019, Nature.

[21]  Philip Lewis,et al.  Evaluation of regional estimates of winter wheat yield by assimilating three remotely sensed reflectance datasets into the coupled WOFOST–PROSAIL model , 2019, European Journal of Agronomy.

[22]  C. Justice,et al.  A generalized regression-based model for forecasting winter wheat yields in Kansas and Ukraine using MODIS data , 2010 .

[23]  Yang Shao,et al.  An analysis of cropland mask choice and ancillary data for annual corn yield forecasting using MODIS data , 2015, Int. J. Appl. Earth Obs. Geoinformation.

[24]  Guigang Zhang,et al.  Deep Learning , 2016, Int. J. Semantic Comput..

[25]  Stefano Ermon,et al.  Deep Gaussian Process for Crop Yield Prediction Based on Remote Sensing Data , 2017, AAAI.

[26]  Jimmy Ba,et al.  Adam: A Method for Stochastic Optimization , 2014, ICLR.

[27]  Nari Kim,et al.  Machine Learning Approaches to Corn Yield Estimation Using Satellite Images and Climate Data :A Case of Iowa State , 2016 .

[28]  Anuj Karpatne,et al.  Physics Guided RNNs for Modeling Dynamical Systems: A Case Study in Simulating Lake Temperature Profiles , 2018, SDM.

[29]  Qi Jing,et al.  Crop Yield Estimation Using Time-Series MODIS Data and the Effects of Cropland Masks in Ontario, Canada , 2019, Remote. Sens..

[30]  Jianxi Huang,et al.  Assimilating a synthetic Kalman filter leaf area index series into the WOFOST model to improve regional winter wheat yield estimation , 2016 .

[31]  Philip Lewis,et al.  Assimilation of remote sensing into crop growth models: Current status and perspectives , 2019, Agricultural and Forest Meteorology.

[32]  Jianxi Huang,et al.  Improving the timeliness of winter wheat production forecast in the United States of America, Ukraine and China using MODIS data and NCAR Growing Degree Day information , 2015 .

[33]  Marco A. S. Netto,et al.  A Scalable Machine Learning System for Pre-Season Agriculture Yield Forecast , 2018, 2018 IEEE 14th International Conference on e-Science (e-Science).

[34]  Yarin Gal,et al.  Uncertainty in Deep Learning , 2016 .

[35]  Jianxi Huang,et al.  Assimilating Soil Moisture Retrieved from Sentinel-1 and Sentinel-2 Data into WOFOST Model to Improve Winter Wheat Yield Estimation , 2019, Remote. Sens..

[36]  Marvin N. Wright,et al.  SoilGrids250m: Global gridded soil information based on machine learning , 2017, PloS one.

[37]  A. J. Stern,et al.  Crop Yield Assessment from Remote Sensing , 2003 .

[38]  Zoubin Ghahramani,et al.  Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learning , 2015, ICML.

[39]  Alex Kendall,et al.  What Uncertainties Do We Need in Bayesian Deep Learning for Computer Vision? , 2017, NIPS.

[40]  Jianhua Gong,et al.  Urban Flood Mapping Based on Unmanned Aerial Vehicle Remote Sensing and Random Forest Classifier—A Case of Yuyao, China , 2015 .

[41]  Jianhua Gong,et al.  UAV Remote Sensing for Urban Vegetation Mapping Using Random Forest and Texture Analysis , 2015, Remote. Sens..

[42]  Dehai Zhu,et al.  Improving winter wheat yield estimation by assimilation of the leaf area index from Landsat TM and MODIS data into the WOFOST model , 2015 .

[43]  Ryosuke Shibasaki,et al.  ESTIMATING CORN YIELD IN THE UNITED STATES WITH MODIS EVI AND MACHINE LEARNING METHODS , 2016 .

[44]  G. Heuvelink,et al.  SoilGrids1km — Global Soil Information Based on Automated Mapping , 2014, PloS one.

[45]  Jie He,et al.  Improving land surface temperature modeling for dry land of China , 2011 .

[46]  A. Schut,et al.  Improved wheat yield and production forecasting with a moisture stress index, AVHRR and MODIS data. , 2009 .

[47]  Leo Breiman,et al.  Statistical Modeling: The Two Cultures (with comments and a rejoinder by the author) , 2001 .

[48]  Liangzhi You,et al.  Patterns of Cereal Yield Growth across China from 1980 to 2010 and Their Implications for Food Production and Food Security , 2016, PloS one.

[49]  C. Field,et al.  Crop yield gaps: their importance, magnitudes, and causes. , 2009 .

[50]  Michele Meroni,et al.  Estimating and understanding crop yields with explainable deep learning in the Indian Wheat Belt , 2020, Environmental Research Letters.

[51]  Rafael Rieder,et al.  Computer vision and artificial intelligence in precision agriculture for grain crops: A systematic review , 2018, Comput. Electron. Agric..

[52]  Douglas K. Bolton,et al.  Forecasting crop yield using remotely sensed vegetation indices and crop phenology metrics , 2013 .

[53]  Chao Liu,et al.  Predicting County Level Corn Yields Using Deep Long Short Term Memory Models , 2018, ArXiv.

[54]  Bernhard Scholkopf Causality for Machine Learning , 2019 .

[55]  Jürgen Schmidhuber,et al.  Long Short-Term Memory , 1997, Neural Computation.

[56]  Jonathan P. Resop,et al.  Random Forests for Global and Regional Crop Yield Predictions , 2016, PloS one.

[57]  Jie He,et al.  On downward shortwave and longwave radiations over high altitude regions: Observation and modeling in the Tibetan Plateau , 2010 .

[58]  Geoffrey E. Hinton,et al.  Rectified Linear Units Improve Restricted Boltzmann Machines , 2010, ICML.

[59]  David Makowski,et al.  Comparison of Statistical Models for Analyzing Wheat Yield Time Series , 2013, PloS one.

[60]  Catherine Champagne,et al.  Effect of using crop specific masks on earth observation based crop yield forecasting across Canada , 2019, Remote Sensing Applications: Society and Environment.

[61]  Liangliang Zhang,et al.  Prediction of Winter Wheat Yield Based on Multi-Source Data and Machine Learning in China , 2020, Remote. Sens..

[62]  Dehai Zhu,et al.  Integrating Multitemporal Sentinel-1/2 Data for Coastal Land Cover Classification Using a Multibranch Convolutional Neural Network: A Case of the Yellow River Delta , 2019, Remote. Sens..