Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
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William A. Walters | R. Knight | J. Caporaso | N. Fierer | C. Lauber | P. Turnbaugh | C. Lozupone | Donna Berg-Lyons | William Walters | R. Knight | Donna berg-Lyons
[1] Edward Fredkin,et al. Trie memory , 1960, Commun. ACM.
[2] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[3] N. Pace. A molecular view of microbial diversity and the biosphere. , 1997, Science.
[4] K. Konstantinidis,et al. Genomic insights that advance the species definition for prokaryotes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[5] R. Knight,et al. UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.
[6] C. Woese,et al. The architecture of 5S rRNA and its relation to function , 1975, Journal of Molecular Evolution.
[7] Adam Godzik,et al. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..
[8] Susan M. Huse,et al. Microbial diversity in the deep sea and the underexplored “rare biosphere” , 2006, Proceedings of the National Academy of Sciences.
[9] R. B. Jackson,et al. The diversity and biogeography of soil bacterial communities. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[10] Susan M. Huse,et al. Microbial Population Structures in the Deep Marine Biosphere , 2007, Science.
[11] F. Bushman,et al. Short pyrosequencing reads suffice for accurate microbial community analysis , 2007, Nucleic acids research.
[12] R. Knight,et al. Global patterns in bacterial diversity , 2007, Proceedings of the National Academy of Sciences.
[13] Jonathan P. Bollback,et al. The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing , 2007, PloS one.
[14] R. Knight,et al. Quantitative and Qualitative β Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities , 2007, Applied and Environmental Microbiology.
[15] G. Casella,et al. Pyrosequencing enumerates and contrasts soil microbial diversity , 2007, The ISME Journal.
[16] J. Tiedje,et al. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.
[17] R. Knight,et al. Evolution of Mammals and Their Gut Microbes , 2008, Science.
[18] Philip Hugenholtz,et al. A renaissance for the pioneering 16S rRNA gene. , 2008, Current opinion in microbiology.
[19] R. Knight,et al. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex , 2008, Nature Methods.
[20] R. Knight,et al. Worlds within worlds: evolution of the vertebrate gut microbiota , 2008, Nature Reviews Microbiology.
[21] C. Deming,et al. Topographical and Temporal Diversity of the Human Skin Microbiome , 2009, Science.
[22] R. Knight,et al. Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale , 2009, Applied and Environmental Microbiology.
[23] Susan M. Huse,et al. Metagenomic study of the oral microbiota by Illumina high-throughput sequencing. , 2009, Journal of microbiological methods.
[24] R. Knight,et al. Microbial community profiling for human microbiome projects: Tools, techniques, and challenges. , 2009, Genome research.
[25] Adam P. Arkin,et al. FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.
[26] R. Knight,et al. Bacterial Community Variation in Human Body Habitats Across Space and Time , 2009, Science.
[27] Dmitry Pushkarev,et al. Single-molecule sequencing of an individual human genome , 2009, Nature Biotechnology.
[28] C. Quince,et al. Accurate determination of microbial diversity from 454 pyrosequencing data , 2009, Nature Methods.
[29] B. Roe,et al. A core gut microbiome in obese and lean twins , 2008, Nature.
[30] E. Casamayor,et al. Global ecological patterns in uncultured Archaea , 2010, The ISME Journal.
[31] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[32] Bernard Henrissat,et al. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins , 2010, Proceedings of the National Academy of Sciences.
[33] R. Knight,et al. Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data , 2009, The ISME Journal.
[34] V. Kunin,et al. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. , 2009, Environmental microbiology.