Mutual interaction of microbiota and host immunity during health and diseases

Microbiota–host interaction has attracted more and more attentions in recent years. The association between microbiota and host health is largely attributed to its influence on host immune system. Microbial-derived antigens and metabolites play a critical role in shaping the host immune system, including regulating its development, activation, and function. However, during various diseases the microbiota–host communication is frequently found to be disordered. In particular, gut microbiota dysbiosis associated with or led to the occurrence and progression of infectious diseases, autoimmune diseases, metabolic diseases, and neurological diseases. Pathogenic microbes and their metabolites disturb the protective function of immune system, and lead to disordered immune responses that usually correlate with disease exacerbation. In the other hand, the immune system also regulates microbiota composition to keep host homeostasis. Here, we will discuss the current advances of our knowledge about the interactions between microbiota and host immune system during health and diseases.

[1]  W. M. van der Flier,et al.  Contribution of Gut Microbiota to Immunological Changes in Alzheimer’s Disease , 2021, Frontiers in Immunology.

[2]  J. Round,et al.  Thymic development of gut-microbiota-specific T cells , 2021, Nature.

[3]  C. Mackay,et al.  Gut microbial metabolites facilitate anticancer therapy efficacy by modulating cytotoxic CD8+ T cell immunity. , 2021, Cell metabolism.

[4]  P. Vos,et al.  Benefits of bacteria-derived exopolysaccharides on gastrointestinal microbiota, immunity and health , 2020 .

[5]  V. Nizet,et al.  TLR4 signaling and macrophage inflammatory responses are dampened by GIV/Girdin , 2020, Proceedings of the National Academy of Sciences.

[6]  John C. Macbeth,et al.  Interpersonal Gut Microbiome Variation Drives Susceptibility and Resistance to Cholera Infection , 2020, Cell.

[7]  C. Mathieu,et al.  Vitamin D’s Effect on Immune Function , 2020, Nutrients.

[8]  J. D. Di Santo,et al.  Bacteria-Induced Group 2 Innate Lymphoid Cells in the Stomach Provide Immune Protection through Induction of IgA. , 2020, Immunity.

[9]  P. Marzullo,et al.  Pathophysiological Role and Therapeutic Implications of Vitamin D in Autoimmunity: Focus on Chronic Autoimmune Diseases , 2020, Nutrients.

[10]  M. Scholz,et al.  Propionic Acid Shapes the Multiple Sclerosis Disease Course by an Immunomodulatory Mechanism , 2020, Cell.

[11]  M. Grabowski,et al.  Cardiac Arrhythmias in Autoimmune Diseases. , 2020, Circulation journal : official journal of the Japanese Circulation Society.

[12]  J. Gommerman,et al.  Dendritic Cell Subsets in Intestinal Immunity and Inflammation , 2020, The Journal of Immunology.

[13]  M. Hepworth,et al.  Immunoregulatory Sensory Circuits in Group 3 Innate Lymphoid Cell (ILC3) Function and Tissue Homeostasis , 2020, Frontiers in Immunology.

[14]  Xiong Guan,et al.  The Th17/Treg Cell Balance: A Gut Microbiota-Modulated Story , 2019, Microorganisms.

[15]  W. Garrett,et al.  Metabolite-Sensing Receptor Ffar2 Regulates Colonic Group 3 Innate Lymphoid Cells and Gut Immunity. , 2019, Immunity.

[16]  Deepjyoti K Das,et al.  Potential Role of Gut Microbiota in Induction and Regulation of Innate Immune Memory , 2019, Front. Immunol..

[17]  H. Suganuma,et al.  Regulation of Gut Microbiota and Metabolic Endotoxemia with Dietary Factors , 2019, Nutrients.

[18]  G. Muscogiuri,et al.  Gut microbiota: a new path to treat obesity , 2019, International journal of obesity supplements.

[19]  Wen-Tao Ma,et al.  Interactions Between the Gut Microbiota and the Host Innate Immune Response Against Pathogens , 2019, Front. Immunol..

[20]  Y. Cong,et al.  Microbiota Metabolite Butyrate Differentially Regulates Th1 and Th17 Cells' Differentiation and Function in Induction of Colitis. , 2019, Inflammatory bowel diseases.

[21]  M. Fischbach,et al.  Bile acid metabolites control Th17 and Treg cell differentiation , 2018, bioRxiv.

[22]  J. M. Rhoads,et al.  Probiotics in Disease Prevention and Treatment , 2018, Journal of clinical pharmacology.

[23]  J. Allaire,et al.  The Intestinal Epithelium: Central Coordinator of Mucosal Immunity. , 2018, Trends in immunology.

[24]  R. Locksley,et al.  Innate Lymphoid Cells: 10 Years On , 2018, Cell.

[25]  J. Machlowska,et al.  Helicobacter pylori associated factors in the development of gastric cancer with special reference to the early-onset subtype , 2018, Oncotarget.

[26]  Y. Lee,et al.  Intestinal microbiota and the immune system in metabolic diseases , 2018, Journal of Microbiology.

[27]  L. Van Kaer,et al.  Intestinal Intraepithelial Lymphocytes: Sentinels of the Mucosal Barrier. , 2017, Trends in immunology.

[28]  E. Karlsson,et al.  Analysis of the Human Mucosal Response to Cholera Reveals Sustained Activation of Innate Immune Signaling Pathways , 2017, Infection and Immunity.

[29]  K. Berer,et al.  Gut microbiota from multiple sclerosis patients enables spontaneous autoimmune encephalomyelitis in mice , 2017, Proceedings of the National Academy of Sciences.

[30]  A. Visekruna,et al.  The Microbial Metabolite Butyrate Induces Expression of Th1-Associated Factors in CD4+ T Cells , 2017, Front. Immunol..

[31]  H. Kiyono,et al.  Microbiota-derived butyrate suppresses group 3 innate lymphoid cells in terminal ileal Peyer’s patches , 2017, Scientific Reports.

[32]  C. Mackay,et al.  Metabolite-Sensing G Protein-Coupled Receptors-Facilitators of Diet-Related Immune Regulation. , 2017, Annual review of immunology.

[33]  Y. Belkaid,et al.  Homeostatic Immunity and the Microbiota. , 2017, Immunity.

[34]  J. Lewis,et al.  Colonic Microbiota Encroachment Correlates With Dysglycemia in Humans , 2017, Cellular and molecular gastroenterology and hepatology.

[35]  David H. Miller,et al.  Diagnosis of multiple sclerosis: progress and challenges , 2017, The Lancet.

[36]  S. Hazen,et al.  Gut Microbiota in Cardiovascular Health and Disease , 2017, Circulation research.

[37]  D. Kasper,et al.  The symbiotic bacterial surface factor polysaccharide A on Bacteroides fragilis inhibits IL-1β-induced inflammation in human fetal enterocytes via toll receptors 2 and 4 , 2017, PloS one.

[38]  T. Dinan,et al.  The Microbiome-Gut-Brain Axis in Health and Disease. , 2017, Gastroenterology Clinics of North America.

[39]  J. Olefsky,et al.  Inflammatory mechanisms linking obesity and metabolic disease , 2017, The Journal of clinical investigation.

[40]  W. D. de Vos,et al.  Homeostasis of the gut barrier and potential biomarkers , 2016, American journal of physiology. Gastrointestinal and liver physiology.

[41]  C. Benoist,et al.  Identifying species of symbiont bacteria from the human gut that, alone, can induce intestinal Th17 cells in mice , 2016, Proceedings of the National Academy of Sciences.

[42]  T. R. Licht,et al.  Environmental spread of microbes impacts the development of metabolic phenotypes in mice transplanted with microbial communities from humans , 2016, The ISME Journal.

[43]  Kelvin K L Chong,et al.  Polymicrobial-Host Interactions during Infection. , 2016, Journal of molecular biology.

[44]  I. Amit,et al.  Microglia development follows a stepwise program to regulate brain homeostasis , 2016, Science.

[45]  C. Appleyard,et al.  Colonic macrophage polarization in homeostasis, inflammation, and cancer. , 2016, American journal of physiology. Gastrointestinal and liver physiology.

[46]  E. Ma,et al.  Memory CD8(+) T Cells Require Increased Concentrations of Acetate Induced by Stress for Optimal Function. , 2016, Immunity.

[47]  A. Xu,et al.  Akkermansia Muciniphila Protects Against Atherosclerosis by Preventing Metabolic Endotoxemia-Induced Inflammation in Apoe −/− Mice , 2016, Circulation.

[48]  F. Bäckhed,et al.  From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites , 2016, Cell.

[49]  J. Walter,et al.  Human Microbiota-Associated Mice: A Model with Challenges. , 2016, Cell host & microbe.

[50]  D. Kasper,et al.  How colonization by microbiota in early life shapes the immune system , 2016, Science.

[51]  U. Dirnagl,et al.  Depletion of Cultivatable Gut Microbiota by Broad-Spectrum Antibiotic Pretreatment Worsens Outcome After Murine Stroke , 2016, Stroke.

[52]  Renan Corrêa-Oliveira,et al.  Regulation of immune cell function by short-chain fatty acids , 2016, Clinical & translational immunology.

[53]  Eric G. Pamer,et al.  Commensal microbiota affects ischemic stroke outcome by regulating intestinal γδT cells , 2016, Nature Medicine.

[54]  Shuzhao Li,et al.  The amino acid sensor GCN2 controls gut inflammation by inhibiting inflammasome activation , 2016, Nature.

[55]  V. Kraus,et al.  Does lipopolysaccharide-mediated inflammation have a role in OA? , 2016, Nature Reviews Rheumatology.

[56]  J. Kolls,et al.  Interleukin-22 Signaling in the Regulation of Intestinal Health and Disease , 2016, Front. Cell Dev. Biol..

[57]  P. Brigidi,et al.  The effect of short-chain fatty acids on human monocyte-derived dendritic cells , 2015, Scientific Reports.

[58]  Ana I. Domingos,et al.  An IL-23R/IL-22 Circuit Regulates Epithelial Serum Amyloid A to Promote Local Effector Th17 Responses , 2015, Cell.

[59]  J. Sirard,et al.  Lactate and short chain fatty acids produced by microbial fermentation downregulate proinflammatory responses in intestinal epithelial cells and myeloid cells. , 2015, Immunobiology.

[60]  Liza Konnikova,et al.  Individual intestinal symbionts induce a distinct population of RORγ+ regulatory T cells , 2015, Science.

[61]  I. Amit,et al.  Host microbiota constantly control maturation and function of microglia in the CNS , 2015, Nature Neuroscience.

[62]  A. Chervonsky,et al.  Microbiota and autoimmunity: exploring new avenues. , 2015, Cell host & microbe.

[63]  E. Butcher,et al.  Generation and transcriptional programming of intestinal dendritic cells: Essential role of retinoic acid , 2015, Mucosal Immunology.

[64]  Junling Han,et al.  Intestinal microbiota and type 2 diabetes: from mechanism insights to therapeutic perspective. , 2014, World journal of gastroenterology.

[65]  Rustem F. Ismagilov,et al.  Rapid fucosylation of intestinal epithelium sustains host-commensal symbiosis in sickness , 2014, Nature.

[66]  S. Robson,et al.  An intestinal commensal symbiosis factor controls neuroinflammation via TLR2-mediated CD39 signaling , 2014, Nature Communications.

[67]  yang-xin fu,et al.  Lymphotoxin organizes contributions to host defense and metabolic illness from innate lymphoid cells. , 2014, Cytokine & growth factor reviews.

[68]  Dorian B. McGavern,et al.  Microglia development and function. , 2014, Annual review of immunology.

[69]  Huidong Shi,et al.  Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis. , 2014, Immunity.

[70]  S. Zeissig,et al.  Sphingolipids from a Symbiotic Microbe Regulate Homeostasis of Host Intestinal Natural Killer T Cells , 2014, Cell.

[71]  R. Medzhitov,et al.  The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition , 2014, Proceedings of the National Academy of Sciences.

[72]  A. Cianferoni Invariant Natural Killer T Cells , 2013 .

[73]  M. Tomita,et al.  Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells , 2013, Nature.

[74]  A. Rudensky,et al.  Metabolites produced by commensal bacteria promote peripheral regulatory T cell generation , 2013, Nature.

[75]  K. McCoy,et al.  Intestinal Microbial Diversity during Early-Life Colonization Shapes Long-Term IgE Levels , 2013, Cell host & microbe.

[76]  S. Tanabe The Effect of Probiotics and Gut Microbiota on Th17 Cells , 2013, International reviews of immunology.

[77]  A. De Luca,et al.  Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22. , 2013, Immunity.

[78]  M. Hattori,et al.  Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota , 2013, Nature.

[79]  Lucie Geurts,et al.  Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity , 2013, Proceedings of the National Academy of Sciences.

[80]  Eric Vivier,et al.  Innate lymphoid cells — a proposal for uniform nomenclature , 2013, Nature Reviews Immunology.

[81]  E. Butcher,et al.  Retinoic acid regulates the development of a gut homing precursor for intestinal dendritic cells , 2012, Mucosal Immunology.

[82]  B. Malissen,et al.  Resident and pro-inflammatory macrophages in the colon represent alternative context-dependent fates of the same Ly6Chi monocyte precursors , 2012, Mucosal Immunology.

[83]  S. Mazmanian,et al.  Intestinal microbes affect phenotypes and functions of invariant natural killer T cells in mice. , 2012, Gastroenterology.

[84]  P. Staeheli,et al.  Priming of natural killer cells by nonmucosal mononuclear phagocytes requires instructive signals from commensal microbiota. , 2012, Immunity.

[85]  R. Siebert,et al.  Microbial Exposure During Early Life Has Persistent Effects on Natural Killer T Cell Function , 2012, Science.

[86]  K. Venema,et al.  Propionic acid affects immune status and metabolism in adipose tissue from overweight subjects , 2012, European journal of clinical investigation.

[87]  A. Rissanen,et al.  Bacterial Endotoxin Activity in Human Serum Is Associated With Dyslipidemia, Insulin Resistance, Obesity, and Chronic Inflammation , 2011, Diabetes Care.

[88]  D. Artis,et al.  Border patrol: regulation of immunity, inflammation and tissue homeostasis at barrier surfaces by IL-22 , 2011, Nature Immunology.

[89]  Brian J. Bennett,et al.  Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease , 2011, Nature.

[90]  K. Honda,et al.  Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species , 2011, Science.

[91]  M. Maa,et al.  Butyrate reduced lipopolysaccharide-mediated macrophage migration by suppression of Src enhancement and focal adhesion kinase activity. , 2010, The Journal of nutritional biochemistry.

[92]  S. Dasgupta,et al.  Central Nervous System Demyelinating Disease Protection by the Human Commensal Bacteroides fragilis Depends on Polysaccharide A Expression , 2010, The Journal of Immunology.

[93]  W. D. de Vos,et al.  Mucin-bacterial interactions in the human oral cavity and digestive tract , 2010, Gut microbes.

[94]  K. Honda,et al.  Immune responses to gut microbiota-commensals and pathogens , 2010, Gut microbes.

[95]  M. Heikenwalder,et al.  Reversible Microbial Colonization of Germ-Free Mice Reveals the Dynamics of IgA Immune Responses , 2010, Science.

[96]  S. Mazmanian,et al.  Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota , 2010, Proceedings of the National Academy of Sciences.

[97]  D. Kasper,et al.  A polysaccharide from the human commensal Bacteroides fragilis protects against CNS demyelinating disease , 2010, Mucosal Immunology.

[98]  F. Cantatore,et al.  Vitamin D and the Immune System , 2010, The Journal of Rheumatology.

[99]  J. Tschopp,et al.  NLRP3 inflammasome activation: the convergence of multiple signalling pathways on ROS production? , 2010, Nature Reviews Immunology.

[100]  Brian E. McIntosh,et al.  Mammalian Per-Arnt-Sim proteins in environmental adaptation. , 2010, Annual review of physiology.

[101]  K. Itoh,et al.  16S rRNA gene sequence‐based analysis of clostridia related to conversion of germfree mice to the normal state , 2009, Journal of applied microbiology.

[102]  H. Cheroutre,et al.  More stories on Th17 cells , 2009, Cell Research.

[103]  Hisami Ikeda,et al.  Molecular mechanisms of macrophage activation and deactivation by lipopolysaccharide: roles of the receptor complex. , 2003, Pharmacology & therapeutics.

[104]  Roy Bareilly Cholera , 1873, Science.

[105]  M. Reinshagen [Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease]. , 2015, Zeitschrift fur Gastroenterologie.

[106]  E. Buzás,et al.  The emerging role of aryl hydrocarbon receptor in the activation and differentiation of Th17 cells , 2015, Cellular and Molecular Life Sciences.

[107]  D. Littman,et al.  Microbiota: host interactions in mucosal homeostasis and systemic autoimmunity. , 2013, Cold Spring Harbor symposia on quantitative biology.

[108]  박주홍,et al.  The Toll-Like Receptor 2 pathway Establishes Colonization by a Commensal of the Human Microbiota , 2011 .