mechanism of transposon-mediated gene activation.

Transposable Insertion Sequences (IS elements) have been shown to provide various benefits to their hosts via gene activation or inactivation under stress conditions by appropriately inserting into specific chromosomal sites. Activation is usually due to derepression or introduction of a complete or partial promoter located within the element. Here we define a novel mechanism of gene activation by the transposon IS5 in Escherichia coli . The glycerol utilization operon, glpFK , that is silent in the absence of the cAMP-Crp complex, is activated by IS5 when inserted upstream of its promoter. High-level expression is nearly constitutive, only mildly dependent on glycerol, glucose, GlpR, and Crp, and allows growth at a rate similar to or more rapid than that of wild-type cells. Expression is from the glpFK promoter and dependent on (1) the DNA phase, (2) integration host factor (IHF), and (3) a short region at the 3 9 end of IS5 harboring a permanent bend and an IHF binding site. The lacZYA operon is also subject to such activation in the absence of Crp. Thus, we have defined a novel mechanism of gene activation involving transposon insertion that may be generally applicable to many organisms.

[1]  Zhongge Zhang,et al.  A mechanism of transposon‐mediated directed mutation , 2009, Molecular microbiology.

[2]  S. Madhusudan,et al.  Regulation of the yjjQ-bglJ Operon, Encoding LuxR-Type Transcription Factors, and the Divergent yjjP Gene by H-NS and LeuO , 2007, Journal of bacteriology.

[3]  Terence Hwa,et al.  Combinatorial transcriptional control of the lactose operon of Escherichia coli , 2007, Proceedings of the National Academy of Sciences.

[4]  E. Friedberg,et al.  DNA Repair and Mutagenesis , 2006 .

[5]  Milton H. Saier,et al.  Functional Interactions between the Carbon and Iron Utilization Regulators, Crp and Fur, in Escherichia coli , 2005, Journal of bacteriology.

[6]  M. Saier,et al.  Characterization of Soluble Enzyme II Complexes of the Escherichia coli Phosphotransferase System , 2004, Journal of bacteriology.

[7]  P. Matsumura,et al.  Increased Motility of Escherichia coli by Insertion Sequence Element Integration into the Regulatory Region of the flhD Operon , 2004, Journal of bacteriology.

[8]  Milton H. Saier,et al.  Transcriptome Analysis of Crp-Dependent Catabolite Control of Gene Expression in Escherichia coli , 2004, Journal of bacteriology.

[9]  K. Schnetz,et al.  The histone‐like nucleoid structuring protein H‐NS represses the Escherichia coli bgl operon downstream of the promoter , 2004, Molecular microbiology.

[10]  Y. Kohara,et al.  Insertion sequence IS5 contains a sharply curved DNA structure at its terminus , 1988, Molecular and General Genetics MGG.

[11]  Chris E Cooper,et al.  Global Iron-dependent Gene Regulation in Escherichia coli , 2003, Journal of Biological Chemistry.

[12]  P. Valentin‐Hansen,et al.  The Cryptic Adenine Deaminase Gene of Escherichia coli , 2002, The Journal of Biological Chemistry.

[13]  Dominique Schneider,et al.  Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers , 2002, BMC Microbiology.

[14]  B. Wanner,et al.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[15]  J. Geiselmann,et al.  Participation of IHF and a distant UP element in the stimulation of the phage λ PL promoter , 1998, Molecular microbiology.

[16]  T. Mizuno,et al.  The leuO Gene Product Has a Latent Ability To Relieve bgl Silencing inEscherichia coli , 1998, Journal of bacteriology.

[17]  S. Aiyar,et al.  Upstream A-tracts increase bacterial promoter activity through interactions with the RNA polymerase a subunit (A-tract DNAyDNA curvatureyUP element) , 1998 .

[18]  M. Chandler,et al.  Insertion Sequences , 1998, Microbiology and Molecular Biology Reviews.

[19]  M. Mukerji,et al.  Characterization of the negative elements involved in silencing the bgl operon of Escherichia coli: possible roles for DNA gyrase, H‐NS, and CRP–cAMP in regulation , 1997, Molecular microbiology.

[20]  G Zeng,et al.  Repressor for the sn-glycerol 3-phosphate regulon of Escherichia coli K-12: primary structure and identification of the DNA-binding domain , 1996, Journal of bacteriology.

[21]  B. Meyer,et al.  Sensitive detection of bacterial transcription initiation sites and differentiation from RNA processing sites in the pheromone-induced plasmid transfer system of Enterococcus faecalis. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[22]  M Giel,et al.  A mutation in a new gene, bglJ, activates the bgl operon in Escherichia coli K-12. , 1996, Genetics.

[23]  E. Ohtsubo,et al.  Bacterial insertion sequences. , 1996, Current topics in microbiology and immunology.

[24]  K. Schnetz,et al.  Silencing of Escherichia coli bgl promoter by flanking sequence elements. , 1995, The EMBO journal.

[25]  T. Larson,et al.  Characterization of the interaction of the glp repressor of Escherichia coli K-12 with single and tandem glp operator variants , 1994, Journal of bacteriology.

[26]  N. Wittekindt,et al.  Structure and regulation of the glpFK operon encoding glycerol diffusion facilitator and glycerol kinase of Escherichia coli K-12. , 1992, The Journal of biological chemistry.

[27]  B. Rak,et al.  IS5: a mobile enhancer of transcription in Escherichia coli. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[28]  B. Hall,et al.  Mechanisms of activation of the cryptic cel operon of Escherichia coli K12. , 1990, Genetics.

[29]  L. Bracco,et al.  Synthetic curved DNA sequences can act as transcriptional activators in Escherichia coli. , 1989, The EMBO journal.

[30]  E. Lin,et al.  Constitutive activation of the fucAO operon and silencing of the divergently transcribed fucPIK operon by an IS5 element in Escherichia coli mutants selected for growth on L-1,2-propanediol , 1989, Journal of bacteriology.

[31]  Ian R. Booth,et al.  A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli , 1988, Cell.

[32]  D. Galas,et al.  Escherichia coli integration host factor bends the DNA at the ends of IS1 and in an insertion hotspot with multiple IHF binding sites. , 1987, The EMBO journal.

[33]  R. Simons,et al.  Improved single and multicopy lac-based cloning vectors for protein and operon fusions. , 1987, Gene.

[34]  S. LeGrice,et al.  Enhancement of bacterial gene expression by insertion elements or by mutation in a CAP-cAMP binding site. , 1986, Journal of molecular biology.

[35]  Hen-Ming Wu,et al.  DNA bending at adenine · thymine tracts , 1986, Nature.

[36]  R. Sternglanz,et al.  Escherichia coli DNA topoisomerase I mutants have compensatory mutations in DNA gyrase genes , 1982, Cell.

[37]  N. Glansdorff,et al.  IS3 can function as a mobile promoter in E. coli. , 1982, Nucleic acids research.

[38]  J. Roth,et al.  Transposon Tn10 provides a promoter for transcription of adjacent sequences. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[39]  M. Kröger,et al.  Structural analysis of insertion sequence IS5 , 1982, Nature.

[40]  B. Rak,et al.  Expression of two proteins from overlapping and oppositely oriented genes on transposable DNA insertion element IS5 , 1982, Nature.

[41]  A. Wright,et al.  Insertion of DNA activates the cryptic bgl operon in E. coli K12 , 1981, Nature.

[42]  E. C. Lin,et al.  Glycerol dissimilation and its regulation in bacteria. , 1976, Annual review of microbiology.

[43]  E. Lin,et al.  Three Kinds of Controls Affecting the Expression of the glp Regulon in Escherichia coli , 1973, Journal of bacteriology.

[44]  Jeffrey H. Miller Experiments in molecular genetics , 1972 .