genome Saccharomyces and its regulators in the A canonical promoter organization of the transcription machinery Material Supplemental
暂无分享,去创建一个
[1] Bryan J Venters,et al. A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. , 2008, Genome research.
[2] D. Tollervey,et al. A Yeast Exosome Cofactor, Mpp6, Functions in RNA Surveillance and in the Degradation of Noncoding RNA Transcripts , 2008, Molecular and Cellular Biology.
[3] T. Margaritis,et al. Poised RNA Polymerase II Gives Pause for Thought , 2008, Cell.
[4] D. Price. Poised polymerases: on your mark...get set...go! , 2008, Molecular cell.
[5] K. Struhl,et al. The transition from transcriptional initiation to elongation. , 2008, Current opinion in genetics & development.
[6] John T. Lis,et al. Transcription Regulation Through Promoter-Proximal Pausing of RNA Polymerase II , 2008, Science.
[7] Mark D. Biggin,et al. NELF and GAGA Factor Are Linked to Promoter-Proximal Pausing at Many Genes in Drosophila , 2008, Molecular and Cellular Biology.
[8] D. W. Knowles,et al. Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm , 2008, PLoS biology.
[9] Steven J. M. Jones,et al. Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation , 2007, PLoS biology.
[10] K. Srnuul,et al. Activation and Repression Mechanisms in Yeast , 2008 .
[11] Oliver J. Rando,et al. Chromatin remodelling at promoters suppresses antisense transcription , 2007, Nature.
[12] Ruchir Shah,et al. RNA polymerase is poised for activation across the genome , 2007, Nature Genetics.
[13] Manolis Kellis,et al. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo , 2007, Nature Genetics.
[14] Guennaelle Dieppois,et al. Antisense RNA Stabilization Induces Transcriptional Gene Silencing via Histone Deacetylation in S. cerevisiae , 2007, Cell.
[15] N. Proudfoot,et al. Gene Silencing CUTs Both Ways , 2007, Cell.
[16] Ronald W. Davis,et al. A high-resolution atlas of nucleosome occupancy in yeast , 2007, Nature Genetics.
[17] L. Steinmetz,et al. Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D , 2007, Nucleic acids research.
[18] R. Young,et al. A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells , 2007, Cell.
[19] C. Hertel,et al. A role for noncoding transcription in activation of the yeast PHO5 gene , 2007, Proceedings of the National Academy of Sciences.
[20] I. Albert,et al. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome , 2007, Nature.
[21] Bing Li,et al. The Role of Chromatin during Transcription , 2007, Cell.
[22] K. Struhl. Transcriptional noise and the fidelity of initiation by RNA polymerase II , 2007, Nature Structural &Molecular Biology.
[23] Christopher L. Warren,et al. Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase. , 2006, Molecular cell.
[24] K. Garbett,et al. Yeast TFIID Serves as a Coactivator for Rap1p by Direct Protein-Protein Interaction , 2006, Molecular and Cellular Biology.
[25] J. Corden,et al. Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. , 2006, Molecular cell.
[26] D. Libri,et al. Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance. , 2006, Molecular cell.
[27] B. Pugh,et al. Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock. , 2006, Genes & development.
[28] Clifford A. Meyer,et al. Model-based analysis of tiling-arrays for ChIP-chip , 2006, Proceedings of the National Academy of Sciences.
[29] Wolfgang Huber,et al. A high-resolution map of transcription in the yeast genome. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[30] J. Workman,et al. Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[31] Mathieu Blanchette,et al. Variant Histone H2A.Z Is Globally Localized to the Promoters of Inactive Yeast Genes and Regulates Nucleosome Positioning , 2005, PLoS biology.
[32] S. Schreiber,et al. Histone Variant H2A.Z Marks the 5′ Ends of Both Active and Inactive Genes in Euchromatin , 2005, Cell.
[33] B. Cairns,et al. Genome-Wide Dynamics of Htz1, a Histone H2A Variant that Poises Repressed/Basal Promoters for Activation through Histone Loss , 2005, Cell.
[34] Lani F. Wu,et al. Genome-Scale Identification of Nucleosome Positions in S. cerevisiae , 2005, Science.
[35] Roger D Kornberg,et al. Mediator and the mechanism of transcriptional activation. , 2005, Trends in biochemical sciences.
[36] Philip Lijnzaad,et al. Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. , 2005, Molecular cell.
[37] Kevin Struhl,et al. Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo. , 2005, Molecular cell.
[38] B. Pugh,et al. Changes in genomewide occupancy of core transcriptional regulators during heat stress. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[39] Nicola J. Rinaldi,et al. Transcriptional regulatory code of a eukaryotic genome , 2004, Nature.
[40] Andrew J Link,et al. A Protein Complex Containing the Conserved Swi2/Snf2-Related ATPase Swr1p Deposits Histone Variant H2A.Z into Euchromatin , 2004, PLoS biology.
[41] B. Pugh,et al. Identification and Distinct Regulation of Yeast TATA Box-Containing Genes , 2004, Cell.
[42] Wei-Hua Wu,et al. ATP-Driven Exchange of Histone H2AZ Variant Catalyzed by SWR1 Chromatin Remodeling Complex , 2004, Science.
[43] Huiming Ding,et al. A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. , 2003, Molecular cell.
[44] W. Bandlow,et al. Permanent Nucleosome Exclusion from the Gal4p-inducible YeastGCY1 Promoter* , 2003, The Journal of Biological Chemistry.
[45] Daniel A. Griesen,et al. Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression. , 2003, Nucleic acids research.
[46] S. Buratowski,et al. Different sensitivities of bromodomain factors 1 and 2 to histone H4 acetylation. , 2003, Molecular cell.
[47] G. Fourel,et al. General Regulatory Factors (GRFs) as Genome Partitioners* , 2002, The Journal of Biological Chemistry.
[48] Michael R. Green,et al. Differential Requirement of SAGA Components for Recruitment of TATA-Box-Binding Protein to Promoters In Vivo , 2002, Molecular and Cellular Biology.
[49] J. Workman,et al. Function and Selectivity of Bromodomains in Anchoring Chromatin-Modifying Complexes to Promoter Nucleosomes , 2002, Cell.
[50] Nicola J. Rinaldi,et al. Transcriptional Regulatory Networks in Saccharomyces cerevisiae , 2002, Science.
[51] Kevin Struhl,et al. Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex. , 2002, Genes & development.
[52] J. Workman,et al. Transcription Activator Interactions with Multiple SWI/SNF Subunits , 2002, Molecular and Cellular Biology.
[53] I. Simon,et al. The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress. , 2002, Molecular cell.
[54] G. Orphanides,et al. A Unified Theory of Gene Expression , 2002, Cell.
[55] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[56] Sang Jun Han,et al. The Structural and Functional Organization of the Yeast Mediator Complex* , 2001, The Journal of Biological Chemistry.
[57] F. Winston,et al. The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4. , 2001, Genes & development.
[58] J. Workman,et al. Recruitment of HAT Complexes by Direct Activator Interactions with the ATM-Related Tra1 Subunit , 2001, Science.
[59] E. Sekinger,et al. Silenced Chromatin Is Permissive to Activator Binding and PIC Recruitment , 2001, Cell.
[60] P. Laybourn,et al. RNA polymerase II and TBP occupy the repressed CYC1 promoter , 2001, Molecular microbiology.
[61] P. Cramer,et al. Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 Å Resolution , 2001, Science.
[62] T. Furuchi,et al. Two nuclear proteins, Cin5 and Ydr259c, confer resistance to cisplatin in Saccharomyces cerevisiae. , 2001, Molecular pharmacology.
[63] R. Kornberg,et al. Structural organization of yeast and mammalian mediator complexes. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[64] D. Botstein,et al. Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.
[65] S. Berger,et al. Local or global? , 2000 .
[66] George M Church,et al. The Isw2 Chromatin Remodeling Complex Represses Early Meiotic Genes upon Recruitment by Ume6p , 2000, Cell.
[67] B. Pugh,et al. Control of gene expression through regulation of the TATA-binding protein. , 2000, Gene.
[68] A. Dudley,et al. The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo. , 1999, Genes & development.
[69] K. Natarajan,et al. Transcriptional activation by Gcn4p involves independent interactions with the SWI/SNF complex and the SRB/mediator. , 1999, Molecular cell.
[70] C Logie,et al. Recruitment of the SWI/SNF chromatin remodeling complex by transcriptional activators. , 1999, Genes & development.
[71] R. Morse,et al. Chromatin Opening and Transactivator Potentiation by RAP1 in Saccharomyces cerevisiae , 1999, Molecular and Cellular Biology.
[72] K. Nasmyth,et al. Ordered Recruitment of Transcription and Chromatin Remodeling Factors to a Cell Cycle– and Developmentally Regulated Promoter , 2016, Cell.
[73] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[74] Michael R. Green,et al. Dissecting the Regulatory Circuitry of a Eukaryotic Genome , 1998, Cell.
[75] S. Elledge,et al. The DNA Replication and Damage Checkpoint Pathways Induce Transcription by Inhibition of the Crt1 Repressor , 1998, Cell.
[76] F. Robert,et al. Wrapping of promoter DNA around the RNA polymerase II initiation complex induced by TFIIF. , 1998, Molecular cell.
[77] L. Breeden,et al. Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family , 1997, Molecular and cellular biology.
[78] R Ohba,et al. Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex. , 1997, Genes & development.
[79] M. Ptashne,et al. Transcriptional activation by recruitment , 1997, Nature.
[80] Paul Tempst,et al. RSC, an Essential, Abundant Chromatin-Remodeling Complex , 1996, Cell.
[81] T. Richmond,et al. Crystal structure of a yeast TFIIA/TBP/DNA complex , 1996, Nature.
[82] S. Burley,et al. Crystal structure of a TFIIB–TBP–TATA-element ternary complex , 1995, Nature.
[83] D. Shore,et al. RAP1: a protean regulator in yeast. , 1994, Trends in genetics : TIG.
[84] Joyce Li,et al. Topological localization of the human transcription factors IIA, IIB, TATA box-binding protein, and RNA polymerase II-associated protein 30 on a class II promoter. , 1994, The Journal of biological chemistry.
[85] Kim Nasmyth,et al. The role of SWI4 and SWI6 in the activity of G1 cyclins in yeast , 1991, Cell.
[86] P. Sharp,et al. Five intermediate complexes in transcription initiation by RNA polymerase II , 1989, Cell.
[87] I. Herskowitz,et al. Five SWI genes are required for expression of the HO gene in yeast. , 1984, Journal of molecular biology.