Dynamic tuneable G protein-coupled receptor monomer-dimer populations

G protein-coupled receptors (GPCRs) are the largest class of membrane receptors, playing a key role in the regulation of processes as varied as neurotransmission and immune response. Evidence for GPCR oligomerisation has been accumulating that challenges the idea that GPCRs function solely as monomeric receptors; however, GPCR oligomerisation remains controversial primarily due to the difficulties in comparing evidence from very different types of structural and dynamic data. Using a combination of single-molecule and ensemble FRET, double electron–electron resonance spectroscopy, and simulations, we show that dimerisation of the GPCR neurotensin receptor 1 is regulated by receptor density and is dynamically tuneable over the physiological range. We propose a “rolling dimer” interface model in which multiple dimer conformations co-exist and interconvert. These findings unite previous seemingly conflicting observations, provide a compelling mechanism for regulating receptor signalling, and act as a guide for future physiological studies.Evidence suggests oligomerisation of G protein-coupled receptors in membranes, but this is controversial. Here, authors use single-molecule and ensemble FRET, and spectroscopy to show that the neurotensin receptor 1 forms multiple dimer conformations that interconvert - “rolling” interfaces.

[1]  J. Becker,et al.  Identification of residues involved in homodimer formation located within a β-strand region of the N-terminus of a Yeast G protein-coupled receptor , 2012, Journal of receptor and signal transduction research.

[2]  Graeme Milligan,et al.  Allostery at G Protein-Coupled Receptor Homo- and Heteromers: Uncharted Pharmacological Landscapes , 2010, Pharmacological Reviews.

[3]  Y. Santoso,et al.  Enhanced stability and fluidity in droplet on hydrogel bilayers for measuring membrane protein diffusion. , 2007, Nano letters.

[4]  D. Small,et al.  Phase equilibria and structure of dry and hydrated egg lecithin. , 1967, Journal of lipid research.

[5]  Eric R. Prossnitz,et al.  Full characterization of GPCR monomer–dimer dynamic equilibrium by single molecule imaging , 2011, The Journal of cell biology.

[6]  C. Combs,et al.  Dimerization of CXCR4 in living malignant cells: control of cell migration by a synthetic peptide that reduces homologous CXCR4 interactions , 2006, Molecular Cancer Therapeutics.

[7]  G. Ladds,et al.  Receptor activity-modifying proteins; multifunctional G protein-coupled receptor accessory proteins. , 2016, Biochemical Society transactions.

[8]  Kuan-Teh Jeang,et al.  Mechanism of Transdominant Inhibition of CCR5-mediated HIV-1 Infection by ccr5Δ32* , 1997, The Journal of Biological Chemistry.

[9]  B. Lovett,et al.  DEER-Stitch: combining three- and four-pulse DEER measurements for high sensitivity, deadtime free data. , 2012, Journal of magnetic resonance.

[10]  G. Wadhams,et al.  Constitutive dimerization of the G-protein coupled receptor, neurotensin receptor 1, reconstituted into phospholipid bilayers. , 2009, Biophysical journal.

[11]  S. Bell,et al.  Organization of the archaeal MCM complex on DNA and implications for the helicase mechanism , 2005, Nature Structural &Molecular Biology.

[12]  J. Herbert,et al.  Human Umbilical Vein Endothelial Cells Express High Affinity Neurotensin Receptors Coupled to Intracellular Calcium Release (*) , 1995, The Journal of Biological Chemistry.

[13]  P. Seeman,et al.  Dopamine D2 receptor dimers and receptor-blocking peptides. , 1996, Biochemical and biophysical research communications.

[14]  J. Tinevez,et al.  TNF and IL-1 exhibit distinct ubiquitin requirements for inducing NEMO–IKK supramolecular structures , 2014, The Journal of cell biology.

[15]  Donato Rigante,et al.  Lung Involvement in Children with Hereditary Autoinflammatory Disorders , 2016, International journal of molecular sciences.

[16]  Gregory I. Mashanov,et al.  Formation and dissociation of M1 muscarinic receptor dimers seen by total internal reflection fluorescence imaging of single molecules , 2010, Proceedings of the National Academy of Sciences.

[17]  M. Bouvier,et al.  CrossTalk proposal: Weighing the evidence for Class A GPCR dimers, the evidence favours dimers , 2014, The Journal of physiology.

[18]  T. Lazarova,et al.  Oligomerization of the fifth transmembrane domain from the adenosine A2A receptor , 2005, Protein science : a publication of the Protein Society.

[19]  H. Khorana,et al.  Opsin is present as dimers in COS1 cells: identification of amino acids at the dimeric interface. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[20]  R. Abagyan,et al.  Structures of the CXCR4 Chemokine GPCR with Small-Molecule and Cyclic Peptide Antagonists , 2010, Science.

[21]  Tsjerk A. Wassenaar,et al.  Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4 , 2016, PLoS Comput. Biol..

[22]  D. Axelrod Lateral motion of membrane proteins and biological function , 2005, The Journal of Membrane Biology.

[23]  A. Holt,et al.  Lateral diffusion of membrane proteins. , 2009, Journal of the American Chemical Society.

[24]  Jean-François Mercier,et al.  Quantitative Assessment of β1- and β2-Adrenergic Receptor Homo- and Heterodimerization by Bioluminescence Resonance Energy Transfer* , 2002, The Journal of Biological Chemistry.

[25]  Jeonggu Sim,et al.  Intermolecular cross-talk between NTR1 and NTR2 neurotensin receptor promotes intracellular sequestration and functional inhibition of NTR1 receptors. , 2010, Biochemical and biophysical research communications.

[26]  Francesca Fanelli,et al.  Homodimerization of Neurotensin 1 Receptor Involves Helices 1, 2, and 4: Insights from Quaternary Structure Predictions and Dimerization Free Energy Estimations , 2008, J. Chem. Inf. Model..

[27]  J. Lahiri,et al.  Applications of Biomembranes in Drug Discovery , 2006 .

[28]  P. Dijkman,et al.  Lipid modulation of early G protein-coupled receptor signalling events. , 2015, Biochimica et biophysica acta.

[29]  H. Attrill,et al.  Neurotensin receptor type 1: Escherichia coli expression, purification, characterization and biophysical study. , 2007, Biochemical Society transactions.

[30]  R. Stevens,et al.  High-Resolution Crystal Structure of an Engineered Human β2-Adrenergic G Protein–Coupled Receptor , 2007, Science.

[31]  Yusuke Nakamura,et al.  The neuromedin U-growth hormone secretagogue receptor 1b/neurotensin receptor 1 oncogenic signaling pathway as a therapeutic target for lung cancer. , 2006, Cancer research.

[32]  J. Wess,et al.  Structural aspects of M3 muscarinic acetylcholine receptor dimer formation and activation , 2012, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[33]  P. Dijkman,et al.  Reconstitution of membrane proteins: a GPCR as an example. , 2015, Methods in enzymology.

[34]  Jianfeng Liu,et al.  Major ligand-induced rearrangement of the heptahelical domain interface in a GPCR dimer. , 2015, Nature chemical biology.

[35]  Gunnar Jeschke,et al.  Rotamer libraries of spin labelled cysteines for protein studies. , 2011, Physical chemistry chemical physics : PCCP.

[36]  Wayne A Hendrickson,et al.  Ligand sensitivity in dimeric associations of the serotonin 5HT2c receptor , 2008, EMBO reports.

[37]  Jianyun Huang,et al.  Crystal Structure of Oligomeric β1-Adrenergic G Protein- Coupled Receptors in Ligand-Free Basal State , 2013, Nature Structural &Molecular Biology.

[38]  B. O'dowd,et al.  D2 dopamine receptor homodimerization is mediated by multiple sites of interaction, including an intermolecular interaction involving transmembrane domain 4. , 2003, Biochemistry.

[39]  G. Milligan,et al.  Analysis of Human Dopamine D3 Receptor Quaternary Structure* , 2015, The Journal of Biological Chemistry.

[40]  Davide Provasi,et al.  Impact of Lipid Composition and Receptor Conformation on the Spatio-temporal Organization of μ-Opioid Receptors in a Multi-component Plasma Membrane Model , 2016, PLoS Comput. Biol..

[41]  G. Mosser,et al.  Bio-Beads: an efficient strategy for two-dimensional crystallization of membrane proteins. , 1997, Journal of structural biology.

[42]  O. Castell,et al.  Constructing droplet interface bilayers from the contact of aqueous droplets in oil , 2013, Nature Protocols.

[43]  C. Costa-Neto,et al.  Recent updates on GPCR biased agonism. , 2016, Pharmacological research.

[44]  R. Stevens,et al.  Structure of the human k-opioid receptor in complex with JDTic , 2012 .

[45]  Leonardo Pardo,et al.  Ligand-regulated oligomerization of β2-adrenoceptors in a model lipid bilayer , 2009, The EMBO journal.

[46]  Daniel T Chiu,et al.  Deconvolving single-molecule intensity distributions for quantitative microscopy measurements. , 2007, Biophysical journal.

[47]  O. Melander,et al.  An obligatory role for neurotensin in high fat diet-induced obesity , 2016, Nature.

[48]  G. Drummen,et al.  International Journal of Molecular Sciences G Protein-coupled Receptors in Cancer , 2022 .

[49]  W. Goddard,et al.  Activation mechanism of the G protein-coupled sweet receptor heterodimer with sweeteners and allosteric agonists , 2017, Proceedings of the National Academy of Sciences.

[50]  Tong Liu,et al.  Structural Basis of M3 Muscarinic Receptor Dimer/Oligomer Formation* , 2011, The Journal of Biological Chemistry.

[51]  J. Wess,et al.  Identification and Molecular Characterization of m3 Muscarinic Receptor Dimers* , 1999, The Journal of Biological Chemistry.

[52]  Ruben Abagyan,et al.  Structure of the human histamine H1 receptor complex with doxepin , 2011, Nature.

[53]  George Khelashvili,et al.  Membrane Driven Spatial Organization of GPCRs , 2013, Scientific Reports.

[54]  Graeme Milligan,et al.  The α1b-Adrenoceptor Exists as a Higher-Order Oligomer: Effective Oligomerization Is Required for Receptor Maturation, Surface Delivery, and Function , 2007, Molecular Pharmacology.

[55]  C. Altenbach,et al.  High-resolution distance mapping in rhodopsin reveals the pattern of helix movement due to activation , 2008, Proceedings of the National Academy of Sciences.

[56]  B. Herman,et al.  Quantitative fluorescence resonance energy transfer measurements using fluorescence microscopy. , 1998, Biophysical journal.

[57]  Lei Shi,et al.  The Fourth Transmembrane Segment Forms the Interface of the Dopamine D2 Receptor Homodimer* , 2003, The Journal of Biological Chemistry.

[58]  Siewert J Marrink,et al.  Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models. , 2014, Journal of chemical theory and computation.

[59]  Adrian E. Raftery,et al.  Model-Based Clustering, Discriminant Analysis, and Density Estimation , 2002 .

[60]  O. Castell,et al.  Quantification of membrane protein inhibition by optical ion flux in a droplet interface bilayer array. , 2012, Angewandte Chemie.

[61]  H. Bayley,et al.  Rapid assembly of a multimeric membrane protein pore. , 2011, Biophysical journal.

[62]  A. Sali,et al.  Statistical potential for assessment and prediction of protein structures , 2006, Protein science : a publication of the Protein Society.

[63]  Michel Bouvier,et al.  A Peptide Derived from a β2-Adrenergic Receptor Transmembrane Domain Inhibits Both Receptor Dimerization and Activation* , 1996, The Journal of Biological Chemistry.

[64]  Marzia A. Cremona,et al.  Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis , 2016, PLoS Comput. Biol..

[65]  P. Marin,et al.  G Protein Activation by Serotonin Type 4 Receptor Dimers , 2011, The Journal of Biological Chemistry.

[66]  Stefan Engelhardt,et al.  Analysis of receptor oligomerization by FRAP microscopy , 2009, Nature Methods.

[67]  Joseph Shiloach,et al.  Dimerization of the class A G protein-coupled neurotensin receptor NTS1 alters G protein interaction , 2007, Proceedings of the National Academy of Sciences.

[68]  P. Kitabgi,et al.  Constitutive activation of the neurotensin receptor 1 by mutation of Phe358 in Helix seven , 2002, British journal of pharmacology.

[69]  L. Pardo,et al.  Crystal structure of the μ-opioid receptor bound to a morphinan antagonist , 2012, Nature.

[70]  X. Fang,et al.  Single-molecule imaging reveals the stoichiometry change of β2-adrenergic receptors by a pharmacological biased ligand. , 2016, Chemical communications.

[71]  M. Rask-Andersen,et al.  Trends in the exploitation of novel drug targets , 2011, Nature Reviews Drug Discovery.

[72]  Martin J. Lohse,et al.  G Protein–Coupled Receptor Oligomerization Revisited: Functional and Pharmacological Perspectives , 2014, Pharmacological Reviews.

[73]  P. Sexton,et al.  Receptor activity modifying proteins. , 2001, Cellular signalling.

[74]  Abhinav Sinha,et al.  Monomeric rhodopsin is the minimal functional unit required for arrestin binding. , 2010, Journal of molecular biology.

[75]  Kendall J Blumer,et al.  The Extracellular N-terminal Domain and Transmembrane Domains 1 and 2 Mediate Oligomerization of a Yeast G Protein-coupled Receptor* , 2002, The Journal of Biological Chemistry.

[76]  H. Zimmermann,et al.  DeerAnalysis2006—a comprehensive software package for analyzing pulsed ELDOR data , 2006 .

[77]  Albert C. Pan,et al.  Structure and Dynamics of the M3 Muscarinic Acetylcholine Receptor , 2012, Nature.

[78]  J. Shiloach,et al.  Structure of the agonist-bound neurotensin receptor , 2012, Nature.

[79]  L. Prézeau,et al.  Dimers and beyond: The functional puzzles of class C GPCRs. , 2011, Pharmacology & therapeutics.

[80]  J. Kruschke Bayesian estimation supersedes the t test. , 2013, Journal of experimental psychology. General.

[81]  Maurice Manning,et al.  Probing the Existence of G Protein-Coupled Receptor Dimers by Positive and Negative Ligand-Dependent Cooperative Binding , 2006, Molecular Pharmacology.

[82]  David R. Anderson,et al.  AIC model selection and multimodel inference in behavioral ecology: some background, observations, and comparisons , 2011, Behavioral Ecology and Sociobiology.

[83]  Titiwat Sungkaworn,et al.  Single-molecule analysis of fluorescently labeled G-protein–coupled receptors reveals complexes with distinct dynamics and organization , 2012, Proceedings of the National Academy of Sciences.

[84]  Alfonso Valencia,et al.  Identification of amino acid residues crucial for chemokine receptor dimerization , 2004, Nature Immunology.

[85]  N. Vaidehi,et al.  Structure and dynamics of a constitutively active neurotensin receptor , 2016, Scientific Reports.

[86]  V. Gurevich,et al.  GPCR monomers and oligomers: it takes all kinds , 2008, Trends in Neurosciences.

[87]  F. Alhenc-Gelas,et al.  Human bradykinin B2 receptor sialylation and N-glycosylation participate with disulfide bonding in surface receptor dimerization. , 2006, Biochemistry.

[88]  K. Jaqaman,et al.  Robust single particle tracking in live cell time-lapse sequences , 2008, Nature Methods.

[89]  P. Dijkman,et al.  Lipid-dependent GPCR dimerization. , 2013, Methods in cell biology.

[90]  B. Krumm,et al.  Structural prerequisites for G-protein activation by the neurotensin receptor , 2015, Nature Communications.

[91]  Pascual Ferrara,et al.  The active metabolite of Clopidogrel disrupts P2Y12 receptor oligomers and partitions them out of lipid rafts. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[92]  Jing Chen,et al.  Heterodimerization of the kappa opioid receptor and neurotensin receptor 1 contributes to a novel β-arrestin-2-biased pathway. , 2016, Biochimica et biophysica acta.

[93]  Richard N. Zare,et al.  A monomeric G protein-coupled receptor isolated in a high-density lipoprotein particle efficiently activates its G protein , 2007, Proceedings of the National Academy of Sciences.

[94]  N. Lambert,et al.  Instability of a Class A G Protein-Coupled Receptor Oligomer Interface , 2009, Molecular Pharmacology.

[95]  W. Mustain,et al.  The role of neurotensin in physiologic and pathologic processes , 2011, Current opinion in endocrinology, diabetes, and obesity.

[96]  Marta Filizola,et al.  Crosstalk in G protein-coupled receptors: changes at the transmembrane homodimer interface determine activation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[97]  Anthony Watts,et al.  Gating Topology of the Proton-Coupled Oligopeptide Symporters , 2015, Structure.

[98]  A. Engel,et al.  The supramolecular structure of the GPCR rhodopsin in solution and native disc membranes , 2004, Molecular membrane biology.

[99]  S. Rasmussen,et al.  Crystal Structure of the β2Adrenergic Receptor-Gs protein complex , 2011, Nature.

[100]  Andreas Plückthun,et al.  Structure of signaling-competent neurotensin receptor 1 obtained by directed evolution in Escherichia coli , 2014, Proceedings of the National Academy of Sciences.

[101]  Taekjip Ha,et al.  Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase , 2002, Nature.

[102]  Ruth Nussinov,et al.  PatchDock and SymmDock: servers for rigid and symmetric docking , 2005, Nucleic Acids Res..

[103]  D. Braun,et al.  Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions. , 2013, Methods.

[104]  H. Lother,et al.  Involvement of the Amino Terminus of the B2 Receptor in Agonist-induced Receptor Dimerization* , 1999, The Journal of Biological Chemistry.

[105]  J. Konopka,et al.  Identification of amino acids at two dimer interface regions of the alpha-factor receptor (Ste2). , 2009, Biochemistry.

[106]  W F Drew Bennett,et al.  Improved Parameters for the Martini Coarse-Grained Protein Force Field. , 2013, Journal of chemical theory and computation.

[107]  S. Hardt Rates of diffusion controlled reactions in one, two and three dimensions. , 1979, Biophysical chemistry.

[108]  Joseph Parello,et al.  Structure-based analysis of GPCR function: evidence for a novel pentameric assembly between the dimeric leukotriene B4 receptor BLT1 and the G-protein. , 2003, Journal of molecular biology.

[109]  Graeme Milligan,et al.  The role of dimerisation in the cellular trafficking of G-protein-coupled receptors. , 2010, Current opinion in pharmacology.

[110]  Marta Filizola,et al.  Dopamine D2 receptors form higher order oligomers at physiological expression levels , 2008, The EMBO journal.

[111]  Jie Zheng,et al.  Spectra FRET: A Fluorescence Resonance Energy Transfer Method in Live Cells , 2009 .