Computational and Evolutionary Analysis of HIV Molecular Sequences

Preface. 1. Sampling and Processing HIV Molecular Sequences: a Computational Evolutionary Biologist's Perspective A.G. Rodrigo, et al. 2. Accessing HIV Molecular Information B.T. Foley. 3. HIV-1 Subtyping C.L. Kuiken, T. Leitner. 4. HIV Sequence Signatures and Similarities B. Korber. 5. Graphical Methods for Exploring Sequence Relationships G.F. Weiller. 6. Quantifying Heterogeneity in the HIV Genome H.P. Pinheiro, F. Seillier-Moisewitsch. 7. Phylogenetics of HIV D. Posada, et al. 8. Goals and Strategies for Analysis of Recombination Among Molecular Sequences J.C. Stephens. 9. Molecular Population Genetics: Coalescent Methods Based on Summary Statistics D.A. Vasco, et al. 10. Population Genetics of HIV: Parameter Estimation Using Genealogy-Based Methods P. Beerli, et al. 11. Detecting Selection in Protein Coding Genes Using the Rate of Nonsynonymous and Synonymous Divergence R. Neilsen. 12. Drugs Targeted at HIV - Successes and Resistance C. Sansom, A. Wlodawer. Index.

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