Population dynamics of an introduced bacterium degrading chlorinated benzenes in a soil column and in sewage sludge

[1]  M. P. Cummings PHYLIP (Phylogeny Inference Package) , 2004 .

[2]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[3]  Y. Ioannou Sequence Analysis , 2000, Science.

[4]  J. R. van der Meer,et al.  Evolution of a Pathway for Chlorobenzene Metabolism Leads to Natural Attenuation in Contaminated Groundwater , 1998, Applied and Environmental Microbiology.

[5]  J. R. van der Meer,et al.  Low-Frequency Horizontal Transfer of an Element Containing the Chlorocatechol Degradation Genes fromPseudomonas sp. Strain B13 to Pseudomonas putidaF1 and to Indigenous Bacteria in Laboratory-Scale Activated-Sludge Microcosms , 1998, Applied and Environmental Microbiology.

[6]  Kazuya Watanabe,et al.  Population Dynamics of Phenol-Degrading Bacteria in Activated Sludge Determined by gyrB-Targeted Quantitative PCR , 1998, Applied and Environmental Microbiology.

[7]  K. Timmis,et al.  Superior survival and degradation of dibenzo-p-dioxin and dibenzofuran in soil by soil-adapted Sphingomonas sp. strain RW1 , 1997, Applied Microbiology and Biotechnology.

[8]  R Amann,et al.  Phylogenetic analysis and in situ identification of bacteria in activated sludge , 1997, Applied and environmental microbiology.

[9]  M. Lévesque,et al.  Rapid method for detecting Desulfitobacterium frappieri strain PCP-1 in soil by the polymerase chain reaction , 1997, Applied Microbiology and Biotechnology.

[10]  C. Kulpa,et al.  Application of the polymerase chain reaction (PCR) and reverse transcriptase / PCR for determining the fate of phenol-degrading Pseudomonas putida ATCC 11172 in a bioaugmented sequencing batch reactor , 1997, Applied Microbiology and Biotechnology.

[11]  N. Mazure,et al.  Detection and quantification of degradative genes in soils contaminated by toluene , 1996 .

[12]  J. R. van der Meer,et al.  The Broad Substrate Chlorobenzene Dioxygenase and cis-Chlorobenzene Dihydrodiol Dehydrogenase of Pseudomonas sp. Strain P51 Are Linked Evolutionarily to the Enzymes for Benzene and Toluene Degradation (*) , 1996, The Journal of Biological Chemistry.

[13]  Z. Tamanai-Shacoori,et al.  Variations in R-plasmid DNA concentrations of Escherichia coli during starvation in sewage and brackish waters. , 1996, The Journal of applied bacteriology.

[14]  K. Timmis,et al.  From Xenobiotic to Antibiotic, Formation of Protoanemonin from 4-Chlorocatechol by Enzymes of the 3-Oxoadipate Pathway (*) , 1995, The Journal of Biological Chemistry.

[15]  N. Hendriksen,et al.  Survival and activity of Pseudomonas sp. strain B13(FR1) in a marine microcosm determined by quantitative PCR and an rRNA-targeting probe and its effect on the indigenous bacterioplankton , 1995, Applied and environmental microbiology.

[16]  Proctor Gn,et al.  Mathematics of microbial plasmid instability and subsequent differential growth of plasmid-free and plasmid-containing cells, relevant to the analysis of experimental colony number data. , 1994 .

[17]  P. Normand,et al.  Kinetics of the persistence of chromosomal DNA from genetically engineered Escherichia coli introduced into soil , 1993, Applied and environmental microbiology.

[18]  W. Reineke,et al.  Degradation of chlorobenzoates in soil slurry by special organisms , 1993, Applied Microbiology and Biotechnology.

[19]  M. Moran,et al.  Adaptation of model genetically engineered microorganisms to lake water: growth rate enhancements and plasmid loss , 1992, Applied and environmental microbiology.

[20]  S H Neoh,et al.  Quantitation of targets for PCR by use of limiting dilution. , 1992, BioTechniques.

[21]  K. Timmis,et al.  Evaluation of aquatic sediment microcosms and their use in assessing possible effects of introduced microorganisms on ecosystem parameters , 1992, Applied and environmental microbiology.

[22]  K. Timmis,et al.  Survival and function of a genetically engineered Pseudomonad in aquatic sediment microcosms , 1992, Applied and environmental microbiology.

[23]  M. Ike,et al.  Feasibility of wastewater treatment using genetically engineered microorganisms , 1991 .

[24]  W. D. de Vos,et al.  Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region , 1991, Journal of bacteriology.

[25]  Meer,et al.  Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates , 1991, Journal of bacteriology.

[26]  J. Fry,et al.  Survival and catabolic activity of natural and genetically engineered bacteria in a laboratory-scale activated-sludge unit , 1991, Applied and environmental microbiology.

[27]  S. Goodison,et al.  16S ribosomal DNA amplification for phylogenetic study , 1991, Journal of bacteriology.

[28]  K. Schügerl,et al.  Immobilization of genetically engineered cells: a new strategy for higher stability. , 1990, Journal of biotechnology.

[29]  J. A. Veen,et al.  Habitable pore space and survival ofRhizobium leguminosarum biovartrifolii introduced into soil , 1990, Microbial Ecology.

[30]  J. Fry,et al.  Survival of Pseudomonas putida UWC1 containing cloned catabolic genes in a model activated-sludge unit , 1989, Applied and environmental microbiology.

[31]  A. Zehnder,et al.  Degradation of low concentrations of dichlorobenzenes and 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 in nonsterile soil columns , 1987 .

[32]  M. Alexander,et al.  Reasons for possible failure of inoculation to enhance biodegradation , 1985, Applied and environmental microbiology.

[33]  H. Naveau,et al.  Introduction and PCR detection of Desulfomonile tiedjei in soil slurry microcosms , 2004, Biodegradation.

[34]  Ross A. Overbeek,et al.  The Ribosomal Database Project (RDP) , 1996, Nucleic Acids Res..

[35]  J. Jansson Tracking genetically engineered microorganisms in nature. , 1995, Current opinion in biotechnology.

[36]  Thomas Egli,et al.  The Ecological and Physiological Significance of the Growth of Heterotrophic Microorganisms with Mixtures of Substrates , 1995 .

[37]  G N Proctor,et al.  Mathematics of microbial plasmid instability and subsequent differential growth of plasmid-free and plasmid-containing cells, relevant to the analysis of experimental colony number data. , 1994, Plasmid.