Characterization of force fields for lipid molecules: Applications to crystal structures

The nonbonded portion of a force field for lecithins was characterized by application to the study of the crystal packing geometry and energetics of eight different molecules. The molecules were either lecithin fragments or chosen to isolate particular intermolecular features to test the accuracy of the force field specifically for those interactions. In particular, the hydrocarbon interactions, hydrogen bonding, electrostatics, and phosphate interactions were critiqued. The results support previous findings that indicated that this force field is reasonably accurate for lecithins. For all molecules, a minimum was found near the experimentally determined crystal structure. Using D‐glucitol as an example, it is shown that the structural effect of hydrogen bonding is better represented by a nonelectrostatic force‐field model than by a purely electrostatic model. Results obtained with glycerylphosphocholine and four smaller organic phosphate molecules suggest that further study of nonbonded interactions of phosphate groups is needed. © John Wiley & Sons, Inc.

[1]  D. Williams,et al.  Fluorine nonbonded potential parameters derived from crystalline perfluorocarbons , 1986 .

[2]  R. Pearson,et al.  The molecular structure of lecithin dihydrate , 1979, Nature.

[3]  C. P. Smith,et al.  Crystal and molecular structure of acetoin enediol cyclophosphate , 1967 .

[4]  Donald E. Williams Representation of the molecular electrostatic potential by atomic multipole and bond dipole models , 1988 .

[5]  C. Breneman,et al.  Determining atom‐centered monopoles from molecular electrostatic potentials. The need for high sampling density in formamide conformational analysis , 1990 .

[6]  OREMWA prediction of the structure of benzene clusters: transition from subsidiary to global energy minima , 1992 .

[7]  Herman J. C. Berendsen,et al.  MOLECULAR-DYNAMICS SIMULATION OF A BILAYER-MEMBRANE , 1982 .

[8]  Herman J. C. Berendsen,et al.  MOLECULAR-DYNAMICS OF A BILAYER-MEMBRANE , 1983 .

[9]  S. Rice,et al.  A molecular dynamics study of the structure of a model Langmuir monolayer of amphiphile molecules , 1988 .

[10]  P. Kollman,et al.  An approach to computing electrostatic charges for molecules , 1984 .

[11]  J. Springer,et al.  PHOSPHORUS ESTER BASICITY DEPENDENCE ON CONSTRAINT. CRYSTAL AND MOLECULAR STRUCTURES OF P(OCH2)3CCH2BR AND O‐P(OCH2)2C(CH3)O , 1976 .

[12]  R. S. Mulliken Electronic Population Analysis on LCAO–MO Molecular Wave Functions. I , 1955 .

[13]  Keith B. Ward,et al.  Simulations of lipid crystals: Characterization of potential energy functions and parameters for lecithin molecules , 1991 .

[14]  A. T. Hagler,et al.  Consistent force field studies of intermolecular forces in hydrogen-bonded crystals. 2. A benchmark for the objective comparison of alternative force fields , 1979 .

[15]  H. Berendsen,et al.  Molecular dynamics simulation of a smectic liquid crystal with atomic detail , 1988 .

[16]  Donald E. Williams Molecular packing analysis , 1972 .

[17]  Scott H. Northrup,et al.  Molecular mechanics of kink formation in lipid monolayers , 1984 .

[18]  P. Kollman,et al.  An all atom force field for simulations of proteins and nucleic acids , 1986, Journal of computational chemistry.

[19]  D. E. Williams,et al.  Comparison of models for H2–H2 and H2–He anisotropic intermolecular repulsion , 1977 .

[20]  D. E. Williams,et al.  Accelerated convergence of crystal-lattice potential sums , 1971 .

[21]  H. Hauser,et al.  Glycerol conformation and molecular packing of membrane lipids. The crystal structure of 2,3-dilauroyl-D-glycerol. , 1981, Journal of molecular biology.

[22]  Scott H. Northrup,et al.  Molecular dynamics simulation of disorder transitions in lipid monolayers , 1985 .

[23]  Donald E. Williams,et al.  Representation of the molecular electrostatic potential by a net atomic charge model , 1981 .

[24]  I. Pascher,et al.  Crystal and molecular structure of L -a-glycerylcholin , 1966 .

[25]  L. Ehrenberg,et al.  The Crystal Structure of Lower Paraffins. IV. Refinement of the Crystal Structures of Pentane and Octane. , 1967 .

[26]  Egbert Egberts Molecular dynamics simulation of multibilayer membranes. , 1988 .

[27]  G. A. Jeffrey,et al.  Determination of the crystal structure of the A form of d-glucitol by neutron and X-ray diffraction , 1971 .

[28]  Donald E. Williams,et al.  Alanyl dipeptide potential‐derived net atomic charges and bond dipoles, and their variation with molecular conformation , 1990 .