Evolutionary determinants of genome-wide nucleotide composition

[1]  M. Lynch,et al.  Similar Mutation Rates but Highly Diverse Mutation Spectra in Ascomycete and Basidiomycete Yeasts , 2016, Genome biology and evolution.

[2]  Michael Lynch,et al.  Genetic drift, selection and the evolution of the mutation rate , 2016, Nature Reviews Genetics.

[3]  H. Ellegren,et al.  GC‐biased gene conversion links the recombination landscape and demography to genomic base composition , 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.

[4]  H. Ochman,et al.  Effects of Genic Base Composition on Growth Rate in G+C-rich Genomes , 2015, G3: Genes, Genomes, Genetics.

[5]  Laurent Duret,et al.  GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands , 2014, bioRxiv.

[6]  Goo Jun,et al.  Non-crossover gene conversions show strong GC bias and unexpected clustering in humans , 2014, bioRxiv.

[7]  M. Lynch Evolutionary layering and the limits to cellular perfection , 2012, Proceedings of the National Academy of Sciences.

[8]  H. Ochman,et al.  A selective force favoring increased G+C content in bacterial genes , 2012, Proceedings of the National Academy of Sciences.

[9]  L. Duret,et al.  Evidence for Widespread GC-biased Gene Conversion in Eukaryotes , 2012, Genome biology and evolution.

[10]  Helga Thorvaldsdóttir,et al.  Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..

[11]  M. DePristo,et al.  A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.

[12]  D. Petrov,et al.  Evidence That Mutation Is Universally Biased towards AT in Bacteria , 2010, PLoS genetics.

[13]  F. Hildebrand,et al.  Evidence of Selection upon Genomic GC-Content in Bacteria , 2010, PLoS genetics.

[14]  E. Rocha,et al.  Mutational Patterns Cannot Explain Genome Composition: Are There Any Neutral Sites in the Genomes of Bacteria? , 2010, PLoS genetics.

[15]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[16]  M. Lynch Rate, molecular spectrum, and consequences of human mutation , 2010, Proceedings of the National Academy of Sciences.

[17]  L. Steinmetz,et al.  High-resolution mapping of meiotic crossovers and non-crossovers in yeast , 2008, Nature.

[18]  Alison K. Hottes,et al.  Codon usage between genomes is constrained by genome-wide mutational processes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[19]  L. Duret,et al.  Neutral effect of recombination on base composition in Drosophila. , 2003, Genetical research.

[20]  Gilean McVean,et al.  A population genetic model for the evolution of synonymous codon usage: patterns and predictions , 1999 .

[21]  M. Bulmer The selection-mutation-drift theory of synonymous codon usage. , 1991, Genetics.

[22]  N. Sueoka On the genetic basis of variation and heterogeneity of DNA base composition. , 1962, Proceedings of the National Academy of Sciences of the United States of America.

[23]  L. Duret,et al.  GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates. , 2009, Trends in genetics : TIG.

[24]  Wen-Hsiung Li Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons , 2005, Journal of Molecular Evolution.