An Information Entropy-based Method to Detect microRNA Regulatory Module

[1]  S. Wagenpfeil,et al.  Chemokine receptor CCR6 expression is regulated by miR-518a-5p in colorectal cancer cells , 2014, Zeitschrift für Gastroenterologie.

[2]  Expression and promotor hypermethylation of miR-34a in the various histological subtypes of ovarian cancer , 2016, BMC Cancer.

[3]  M. Ruíz-Borrego,et al.  Prognostic value of CtIP/RBBP8 expression in breast cancer , 2013, Cancer medicine.

[4]  Tiejun Wang,et al.  The combined use of miRNAs and mRNAs as biomarkers for the diagnosis of papillary thyroid carcinoma. , 2015, International journal of molecular medicine.

[5]  Ana Kozomara,et al.  miRBase: annotating high confidence microRNAs using deep sequencing data , 2013, Nucleic Acids Res..

[6]  Martin Reczko,et al.  DIANA-mirPath: Integrating human and mouse microRNAs in pathways , 2009, Bioinform..

[7]  K. Gunsalus,et al.  Combinatorial microRNA target predictions , 2005, Nature Genetics.

[8]  Alexander van Oudenaarden,et al.  Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures. , 2010, Molecular cell.

[9]  E. Lai Predicting and validating microRNA targets , 2004, Genome Biology.

[10]  Lin He,et al.  MicroRNAs: small RNAs with a big role in gene regulation , 2004, Nature reviews genetics.

[11]  C. Burge,et al.  Most mammalian mRNAs are conserved targets of microRNAs. , 2008, Genome research.

[12]  Cheng Liang,et al.  A Novel Method to Detect Functional microRNA Regulatory Modules by Bicliques Merging , 2016, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

[13]  Illés J. Farkas,et al.  Human microRNAs co-silence in well-separated groups and have different predicted essentialities , 2009, Bioinform..

[14]  Juan Mei,et al.  Revealing network communities through modularity maximization by a contraction–dilation method , 2009 .

[15]  Ziv Bar-Joseph,et al.  Integrating sequence, expression and interaction data to determine condition-specific miRNA regulation , 2013, Bioinform..

[16]  Rui Li,et al.  RETRACTED ARTICLE: MiR-34a suppresses ovarian cancer proliferation and motility by targeting AXL , 2015, Tumor Biology.

[17]  Yun Xiao,et al.  MiRNA–miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features , 2010, Nucleic acids research.

[18]  M. Kinouchi,et al.  Involvement of miR-518c-5p to Growth and Metastasis in Oral Cancer , 2014, PloS one.

[19]  Roger Guimerà,et al.  Module identification in bipartite networks with applications to directed networks , 2007 .

[20]  Xin Liu,et al.  Document clustering based on non-negative matrix factorization , 2003, SIGIR.

[21]  Jing Liu,et al.  MicroRNA-100 is a potential molecular marker of non-small cell lung cancer and functions as a tumor suppressor by targeting polo-like kinase 1 , 2012, BMC Cancer.

[22]  Cheng Liang,et al.  Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion , 2014, Bioinform..

[23]  Axel Meissner,et al.  Pulmonary Vein Isolation in 2012: Is It Necessary to Perform a Time Consuming Electrophysical Mapping or Should We Focus on Rapid and Safe Therapies? A Retrospective Analysis of Different Ablation Tools , 2012, International journal of medical sciences.

[24]  Juan Liu,et al.  A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules , 2011, Bioinform..

[25]  P. Mucha,et al.  Spectral tripartitioning of networks. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

[26]  Lei Shen,et al.  Silencing of CXCL12 performs a protective effect on C5b-9-induced injury in podocytes , 2018, International Urology and Nephrology.

[27]  Santo Fortunato,et al.  Community detection in graphs , 2009, ArXiv.

[28]  Jiawei Luo,et al.  A path-based measurement for human miRNA functional similarities using miRNA-disease associations , 2016, Scientific Reports.

[29]  Chris H. Q. Ding,et al.  On Trivial Solution and Scale Transfer Problems in Graph Regularized NMF , 2011, IJCAI.