论文信息 - The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing - 字舞流文

The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing

Abstract The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic will be remembered as one of the defining events of the 21st century. The rapid global outbreak has had significant impacts on human society and is already responsible for millions of deaths. Understanding and tackling the impact of the virus has required a worldwide mobilisation and coordination of scientific research. The COVID-19 Data Portal (https://www.covid19dataportal.org/) was first released as part of the European COVID-19 Data Platform, on April 20th 2020 to facilitate rapid and open data sharing and analysis, to accelerate global SARS-CoV-2 and COVID-19 research. The COVID-19 Data Portal has fortnightly feature releases to continue to add new data types, search options, visualisations and improvements based on user feedback and research. The open datasets and intuitive suite of search, identification and download services, represent a truly FAIR (Findable, Accessible, Interoperable and Reusable) resource that enables researchers to easily identify and quickly obtain the key datasets needed for their COVID-19 research.

Carla A. Cummins | Peter W. Harrison | G. Cochrane | A. Zadissa | R. Apweiler | N. Blomberg | R. Lopez | P. W. Harrison | M. Glont | P. Walter | Y. M. Park | Nicola Buso | Yasmin Fathy | Andrew Parton | Suran Jayathilaka | Nadim Rahman | Alexey Sokolov | Eloy Felix | Geetika Malhotra | Sandeep U. Kadam | Ross Thorne | Craig Russell | Stefan Gutnick Allen | Raheela Aslam | Yasmin Fathy | Manish Kumar | K. Lauer | Abayomi Mosaku | Ossama Edbali | Matt Pearce | Jose Francisco Estrada Pena | Joseph Rossetto | Craig Russell | Sandeep Selvakumar | Xènia Pérez Sitjà | Marianna Ventouratou | Galabina Yordanova | X. Sitjà | S. Selvakumar | A. Sokolov | Mihai Glont

[1] G. Cochrane,et al. The European Bioinformatics Institute: empowering cooperation in response to a global health crisis , 2020, Nucleic Acids Res..

[2] E. McDonagh,et al. Open Targets Platform: supporting systematic drug–target identification and prioritisation , 2020, Nucleic Acids Res..

[3] Rodrigo Lopez,et al. The European Nucleotide Archive in 2020 , 2020, Nucleic Acids Res..

[4] Guy Cochrane,et al. The international nucleotide sequence database collaboration , 2020, Nucleic Acids Res..

[5] Silvio C. E. Tosatto,et al. The InterPro protein families and domains database: 20 years on , 2020, Nucleic Acids Res..

[6] Claire O'Donovan,et al. MetaboLights: a resource evolving in response to the needs of its scientific community , 2019, Nucleic Acids Res..

[7] Radka Svobodová Vareková,et al. PDBe: improved findability of macromolecular structure data in the PDB , 2019, Nucleic Acids Res..

[8] Nuno A. Fonseca,et al. Expression Atlas update: from tissues to single cells , 2019, Nucleic Acids Res..

[9] Alfonso Valencia,et al. PDBe-KB: a community-driven resource for structural and functional annotations , 2019, Nucleic Acids Res..

[10] Simon C. Potter,et al. The EMBL-EBI search and sequence analysis tools APIs in 2019 , 2019, Nucleic Acids Res..

[11] Helen E. Parkinson,et al. The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019 , 2018, Nucleic Acids Res..

[12] Andrew R. Leach,et al. ChEMBL: towards direct deposition of bioassay data , 2018, Nucleic Acids Res..

[13] The UniProt Consortium,et al. UniProt: a worldwide hub of protein knowledge , 2018, Nucleic Acids Res..

[14] Martin Eisenacher,et al. The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..

[15] Henning Hermjakob,et al. Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes , 2018, Nucleic Acids Res..

[16] Laurent Gil,et al. Ensembl variation resources , 2018, Database J. Biol. Databases Curation.

[17] Jee-Hyub Kim,et al. Europe PMC in 2017 , 2017, Nucleic Acids Res..

[18] Johanna R. McEntyre,et al. The BioStudies database—one stop shop for all data supporting a life sciences study , 2017, Nucleic Acids Res..

[19] Henning Hermjakob,et al. The Reactome pathway knowledgebase , 2013, Nucleic Acids Res..

[20] Ardan Patwardhan,et al. EMPIAR: a public archive for raw electron microscopy image data , 2016, Nature Methods.

[21] Arcadi Navarro,et al. The European Genome-phenome Archive of human data consented for biomedical research , 2015, Nature Genetics.

[22] Rafael C. Jimenez,et al. The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases , 2013, Nucleic Acids Res..

[23] John D. Westbrook,et al. EMDataBank.org: unified data resource for CryoEM , 2010, Nucleic Acids Res..