Interpreting predictive maps of disease: highlighting the pitfalls of distribution models in epidemiology.

The application of spatial modelling to epidemiology has increased significantly over the past decade, delivering enhanced understanding of the environmental and climatic factors affecting disease distributions and providing spatially continuous representations of disease risk (predictive maps). These outputs provide significant information for disease control programmes, allowing spatial targeting and tailored interventions. However, several factors (e.g. sampling protocols or temporal disease spread) can influence predictive mapping outputs. This paper proposes a conceptual framework which defines several scenarios and their potential impact on resulting predictive outputs, using simulated data to provide an exemplar. It is vital that researchers recognise these scenarios and their influence on predictive models and their outputs, as a failure to do so may lead to inaccurate interpretation of predictive maps. As long as these considerations are kept in mind, predictive mapping will continue to contribute significantly to epidemiological research and disease control planning.

[1]  Roger Bivand,et al.  Bindings for the Geospatial Data Abstraction Library , 2015 .

[2]  H. Pulliam On the relationship between niche and distribution , 2000 .

[3]  S. Brooker Spatial epidemiology of human schistosomiasis in Africa: risk models, transmission dynamics and control , 2007, Transactions of the Royal Society of Tropical Medicine and Hygiene.

[4]  G. E. Hutchinson,et al.  Homage to Santa Rosalia or Why Are There So Many Kinds of Animals? , 1959, The American Naturalist.

[5]  Peter J. Diggle,et al.  Model-based geostatistic , 2013 .

[6]  Jorge Soberón Niche and area of distribution modeling: a population ecology perspective , 2010 .

[7]  P. Diggle,et al.  Childhood malaria in the Gambia: a case-study in model-based geostatistics. , 2002 .

[8]  P J Diggle,et al.  Spatial modelling and the prediction of Loa loa risk: decision making under uncertainty , 2007, Annals of tropical medicine and parasitology.

[9]  R. Bivand,et al.  Tools for Reading and Handling Spatial Objects , 2016 .

[10]  John Bell,et al.  A review of methods for the assessment of prediction errors in conservation presence/absence models , 1997, Environmental Conservation.

[11]  William K. Reisen,et al.  Landscape epidemiology of vector-borne diseases. , 2010, Annual review of entomology.

[12]  J. Elith,et al.  Species Distribution Models: Ecological Explanation and Prediction Across Space and Time , 2009 .

[13]  W. Hargrove,et al.  The projection of species distribution models and the problem of non-analog climate , 2009, Biodiversity and Conservation.

[14]  David L. Smith,et al.  A World Malaria Map: Plasmodium falciparum Endemicity in 2007 , 2009, PLoS medicine.

[15]  David L. Smith,et al.  A new world malaria map: Plasmodium falciparum endemicity in 2010 , 2011, Malaria Journal.

[16]  Antoine Guisan,et al.  Predicting current and future biological invasions: both native and invaded ranges matter , 2008, Biology Letters.

[17]  Paul M. Emerson,et al.  Targeting Trachoma Control through Risk Mapping: The Example of Southern Sudan , 2010, PLoS neglected tropical diseases.

[18]  E. Fèvre,et al.  INTERNATIONAL JOURNAL OF HEALTH GEOGRAPHICS RESEARCH Open Access The Atlas of human African trypanosomiasis: a , 2022 .

[19]  S. Brooker,et al.  Towards an atlas of human helminth infection in sub-Saharan Africa: the use of geographical information systems (GIS). , 2000, Parasitology today.

[20]  Guangqing Chi,et al.  Applied Spatial Data Analysis with R , 2015 .

[21]  D. Nogues‐Bravo,et al.  Predicting the past distribution of species climatic niches. , 2009 .

[22]  P. Legendre Spatial Autocorrelation: Trouble or New Paradigm? , 1993 .

[23]  J. L. Parra,et al.  Very high resolution interpolated climate surfaces for global land areas , 2005 .

[24]  E. Pebesma,et al.  Classes and Methods for Spatial Data , 2015 .

[25]  Mathieu Marmion,et al.  The performance of state-of-the-art modelling techniques depends on geographical distribution of species. , 2009 .

[26]  S. Brooker,et al.  Bayesian spatial analysis and disease mapping: tools to enhance planning and implementation of a schistosomiasis control programme in Tanzania , 2006, Tropical medicine & international health : TM & IH.

[27]  M. Woolhouse,et al.  The origins of a new Trypanosoma brucei rhodesiense sleeping sickness outbreak in eastern Uganda , 2001, The Lancet.

[28]  Thomas Lengauer,et al.  ROCR: visualizing classifier performance in R , 2005, Bioinform..

[29]  Steven J. Phillips,et al.  The art of modelling range‐shifting species , 2010 .

[30]  N. R. Bergquist,et al.  Vector-borne parasitic diseases: new trends in data collection and risk assessment. , 2001, Acta tropica.

[31]  D. Freedman,et al.  Cartographies of Disease: Maps, Mapping, and Medicine , 2006 .

[32]  R. Snow,et al.  The need for maps of transmission intensity to guide malaria control in Africa , 1996 .

[33]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[34]  Peter M. Atkinson,et al.  Bayesian Geostatistical Analysis and Prediction of Rhodesian Human African Trypanosomiasis , 2010, PLoS neglected tropical diseases.

[35]  Robert J. Hijmans,et al.  Geographic Data Analysis and Modeling , 2015 .

[36]  Jennifer A. Miller Species Distribution Modeling , 2010 .

[37]  M C Thomson,et al.  Predicting malaria infection in Gambian children from satellite data and bed net use surveys: the importance of spatial correlation in the interpretation of results. , 1999, The American journal of tropical medicine and hygiene.

[38]  Antoine Guisan,et al.  Niche dynamics in space and time. , 2008, Trends in ecology & evolution.

[39]  M. Austin Spatial prediction of species distribution: an interface between ecological theory and statistical modelling , 2002 .