Measures of spike train synchrony for data with multiple time scales

Highlights • Adaptive generalizations to ISI-distance, SPIKE-distance and SPIKE-synchronization.• Generalizations disregard spike time differences not relevant on a more global scale.• Rate-independent extension RIA-SPIKE-distance focuses specifically on spike timing.• Correction of edge effects and treatment of special cases.

[1]  Dobromir Dotov,et al.  Time-Series Analysis of Embodied Interaction: Movement Variability and Complexity Matching As Dyadic Properties , 2016, Front. Psychol..

[2]  Jarno M. A. Tanskanen,et al.  Burst analysis tool for developing neuronal networks exhibiting highly varying action potential dynamics , 2012, Front. Comput. Neurosci..

[3]  Tal-Chen Rabinowitch,et al.  Synchronous Rhythmic Interaction Enhances Children’s Perceived Similarity and Closeness towards Each Other , 2015, PloS one.

[4]  Jean-Marc Fellous,et al.  A new similarity measure for spike trains: Sensitivity to bursts and periods of inhibition , 2011, Journal of Neuroscience Methods.

[5]  Ying Du,et al.  An Improved Method of Measuring Multiple Spike Train Synchrony , 2016 .

[6]  Thomas Kreuz,et al.  SPIKY: a graphical user interface for monitoring spike train synchrony , 2013, BMC Neuroscience.

[7]  S. Sherman.  Tonic and burst firing: dual modes of thalamocortical relay , 2001, Trends in Neurosciences.

[8]  F. Mormann,et al.  Detecting determinism from point processes. , 2014, Physical review. E, Statistical, nonlinear, and soft matter physics.

[9]  J. Victor,et al.  Nature and precision of temporal coding in visual cortex: a metric-space analysis. , 1996, Journal of neurophysiology.

[10]  Stephen J Eglen,et al.  Detecting Pairwise Correlations in Spike Trains: An Objective Comparison of Methods and Application to the Study of Retinal Waves , 2014, The Journal of Neuroscience.

[11]  Razvan V. Florian,et al.  A New Class of Metrics for Spike Trains , 2012, Neural Computation.

[12]  Mark C. W. van Rossum,et al.  A Novel Spike Distance , 2001, Neural Computation.

[13]  Thomas Kreuz,et al.  Measures of spike train synchrony , 2011, Scholarpedia.

[14]  Steve M. Potter,et al.  How to Culture, Record and Stimulate Neuronal Networks on Micro-electrode Arrays (MEAs) , 2010, Journal of visualized experiments : JoVE.

[15]  Daniel Chicharro,et al.  What can spike train distances tell us about the neural code? , 2011, Journal of Neuroscience Methods.

[16]  Jonathan D. Victor,et al.  Spike Train Distance , 2019, Encyclopedia of Computational Neuroscience.

[17]  Thomas Kreuz,et al.  Leaders and followers: quantifying consistency in spatio-temporal propagation patterns , 2016, 1610.07986.

[18]  Antonio Politi,et al.  Measuring spike train synchrony , 2007, Journal of Neuroscience Methods.

[19]  Daniel Chicharro,et al.  Measuring multiple spike train synchrony , 2009, Journal of Neuroscience Methods.

[20]  Daniel Chicharro,et al.  Time-resolved and time-scale adaptive measures of spike train synchrony , 2010, Journal of Neuroscience Methods.

[21]  I. K. Wood,et al.  Neuroscience: Exploring the brain , 1996 .

[22]  Wulfram Gerstner,et al.  Improved Similarity Measures for Small Sets of Spike Trains , 2011, Neural Computation.

[23]  Fleur Zeldenrust,et al.  Reliability of spike and burst firing in thalamocortical relay cells , 2013, Journal of Computational Neuroscience.

[24]  Juan Martín Carpio Valadez,et al.  Quadrupedal Robot Locomotion: A Biologically Inspired Approach and Its Hardware Implementation , 2016, Comput. Intell. Neurosci..

[25]  R. Quian Quiroga.  Principles of neural coding. , 2011, Current biology : CB.

[26]  R Quian Quiroga,et al.  Event synchronization: a simple and fast method to measure synchronicity and time delay patterns. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.

[27]  Thomas Kreuz,et al.  PySpike - A Python library for analyzing spike train synchrony , 2016, SoftwareX.

[28]  Frank C. Hoppensteadt,et al.  Bursts as a unit of neural information: selective communication via resonance , 2003, Trends in Neurosciences.

[29]  R. East.  Advances in Cognitive Neurodynamics (V) , 2016, Advances in Cognitive Neurodynamics.

[30]  Daniel Chicharro,et al.  Monitoring spike train synchrony , 2012, Journal of neurophysiology.

[31]  Kan Li,et al.  Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm , 2016, Front. Neurosci..