Physical understanding via reduction of complex multiscale models: Glycolysis in saccharomyces cerevisiae
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[1] Marc R. Roussel,et al. Geometry of the steady-state approximation: Perturbation and accelerated convergence methods , 1990 .
[2] Tamás Turányi,et al. Time scale and dimension analysis of a budding yeast cell cycle model , 2006, BMC Bioinformatics.
[3] Sune Danø,et al. On the mechanisms of glycolytic oscillations in yeast , 2005, The FEBS journal.
[4] S. H. Lam,et al. A study of homogeneous methanol oxidation kinetics using CSP , 1992 .
[5] S. H. Lam,et al. Using CSP to Understand Complex Chemical Kinetics ∗ , 1992 .
[6] Guang Qiang Dong,et al. Simplification of Stochastic Chemical Reaction Models with Fast and Slow Dynamics , 2007, Journal of biological physics.
[7] R. Téman,et al. Integral Manifolds and Inertial Manifolds for Dissipative Partial Differential Equations , 1988 .
[8] S. H. Lam,et al. Using CSP to Understand Complex Chemical Kinetics , 1993 .
[9] Habib N. Najm,et al. Higher order corrections in the approximation of low-dimensional manifolds and the construction of simplified problems with the CSP method , 2005 .
[10] Habib N. Najm,et al. Model Reduction and Physical Understanding of Slowly Oscillating Processes: The Circadian Cycle , 2006, Multiscale Model. Simul..
[11] Linda R Petzold,et al. Oscillator model reduction preserving the phase response: application to the circadian clock. , 2008, Biophysical journal.
[12] S. H. Lam,et al. Conventional asymptotics and computational singular perturbation for simplified kinetics modelling , 1991 .
[13] Hans G. Kaper,et al. Two perspectives on reduction of ordinary differential equations , 2005 .
[14] Ulrich Maas,et al. Implementation of simplified chemical kinetics based on intrinsic low-dimensional manifolds , 1992 .
[15] Ioannis G. Kevrekidis,et al. Constraint-Defined Manifolds: a Legacy Code Approach to Low-Dimensional Computation , 2005, J. Sci. Comput..
[16] Ursula Kummer,et al. A New Time-Dependent Complexity Reduction Method for Biochemical Systems , 2005, Trans. Comp. Sys. Biology.
[17] Vipul Periwal,et al. System Modeling in Cellular Biology: From Concepts to Nuts and Bolts , 2006 .
[18] F. Hynne,et al. Full-scale model of glycolysis in Saccharomyces cerevisiae. , 2001, Biophysical chemistry.
[19] Henning Schmidt,et al. Complexity reduction of biochemical rate expressions , 2008, Bioinform..
[20] S. H. Lam,et al. Understanding complex chemical kinetics with computational singular perturbation , 1989 .
[21] Edda Klipp,et al. Biochemical network models simplified by balanced truncation , 2005, The FEBS journal.
[22] Simon J. Fraser,et al. The steady state and equilibrium approximations: A geometrical picture , 1988 .
[23] D. Broomhead,et al. Something from nothing − bridging the gap between constraint‐based and kinetic modelling , 2007, The FEBS journal.
[24] R. Steuer. Computational approaches to the topology, stability and dynamics of metabolic networks. , 2007, Phytochemistry.
[25] Hans G. Kaper,et al. Asymptotic analysis of two reduction methods for systems of chemical reactions , 2002 .
[26] Neil Fenichel. Geometric singular perturbation theory for ordinary differential equations , 1979 .
[27] S. Lam,et al. The CSP method for simplifying kinetics , 1994 .
[28] Gunnar Cedersund,et al. Reduction of a biochemical model with preservation of its basic dynamic properties , 2006, The FEBS journal.
[29] Habib N. Najm,et al. CSP analysis of a transient flame-vortex interaction: time scales and manifolds , 2003 .
[30] Mauro Valorani,et al. An efficient iterative algorithm for the approximation of the fast and slow dynamics of stiff systems , 2006, J. Comput. Phys..
[31] Hans G. Kaper,et al. Fast and Slow Dynamics for the Computational Singular Perturbation Method , 2004, Multiscale Model. Simul..
[32] Ulrich Maas,et al. Simplifying chemical kinetics: Intrinsic low-dimensional manifolds in composition space , 1992 .