Statistical representation of high-dimensional deformation fields with application to statistically constrained 3D warping

This paper proposes a 3D statistical model aiming at effectively capturing statistics of high-dimensional deformation fields and then uses this prior knowledge to constrain 3D image warping. The conventional statistical shape model methods, such as the active shape model (ASM), have been very successful in modeling shape variability. However, their accuracy and effectiveness typically drop dramatically in high-dimensionality problems involving relatively small training datasets, which is customary in 3D and 4D medical imaging applications. The proposed statistical model of deformation (SMD) uses wavelet-based decompositions coupled with PCA in each wavelet band, in order to more accurately estimate the pdf of high-dimensional deformation fields, when a relatively small number of training samples are available. SMD is further used as statistical prior to regularize the deformation field in an SMD-constrained deformable registration framework. As a result, more robust registration results are obtained relative to using generic smoothness constraints on deformation fields, such as Laplacian-based regularization. In experiments, we first illustrate the performance of SMD in representing the variability of deformation fields and then evaluate the performance of the SMD-constrained registration, via comparing a hierarchical volumetric image registration algorithm, HAMMER, with its SMD-constrained version, referred to as SMD+HAMMER. This SMD-constrained deformable registration framework can potentially incorporate various registration algorithms to improve robustness and stability via statistical shape constraints.

[1]  Ronald R. Coifman,et al.  Entropy-based algorithms for best basis selection , 1992, IEEE Trans. Inf. Theory.

[2]  Karl J. Friston,et al.  Voxel-Based Morphometry—The Methods , 2000, NeuroImage.

[3]  Timothy F. Cootes,et al.  Active Appearance Models , 1998, ECCV.

[4]  Dinggang Shen,et al.  Applications of wavelets in morphometric analysis of medical images , 2003, SPIE Optics + Photonics.

[5]  James S. Duncan,et al.  Medical Image Analysis , 1999, IEEE Pulse.

[6]  James S. Duncan,et al.  Boundary Finding with Parametrically Deformable Models , 1992, IEEE Trans. Pattern Anal. Mach. Intell..

[7]  S. Mallat A wavelet tour of signal processing , 1998 .

[8]  Christos Davatzikos,et al.  Shape Representation via Best Orthogonal Basis Selection , 2004, MICCAI.

[9]  Timothy F. Cootes,et al.  A Unified Information-Theoretic Approach to Groupwise Non-rigid Registration and Model Building , 2005, IPMI.

[10]  Dinggang Shen,et al.  Determining correspondence in 3-D MR brain images using attribute vectors as morphological signatures of voxels , 2004, IEEE Transactions on Medical Imaging.

[11]  U. Grenander,et al.  Statistical methods in computational anatomy , 1997, Statistical methods in medical research.

[12]  Dinggang Shen,et al.  Hierarchical active shape models, using the wavelet transform , 2003, IEEE Transactions on Medical Imaging.

[13]  Christos Davatzikos,et al.  Voxel-Based Morphometry Using the RAVENS Maps: Methods and Validation Using Simulated Longitudinal Atrophy , 2001, NeuroImage.

[14]  Martin Styner,et al.  Evaluation of 3D Correspondence Methods for Model Building , 2003, IPMI.

[15]  Dinggang Shen,et al.  HAMMER: hierarchical attribute matching mechanism for elastic registration , 2002, IEEE Transactions on Medical Imaging.

[16]  Dinggang Shen,et al.  Statistical Representation and Simulation of High-Dimensional Deformations: Application to Synthesizing Brain Deformations , 2005, MICCAI.

[17]  Timothy F. Cootes,et al.  Active Shape Models-Their Training and Application , 1995, Comput. Vis. Image Underst..

[18]  Eric L. Miller,et al.  Wavelet domain image restoration with adaptive edge-preserving regularization , 2000, IEEE Trans. Image Process..

[19]  Dinggang Shen,et al.  Markov random field regularisation models for adaptive binarisation of nonuniform images , 1998 .

[20]  Christos Davatzikos,et al.  Estimating topology preserving and smooth displacement fields , 2004, IEEE Transactions on Medical Imaging.

[21]  Timothy F. Cootes,et al.  The Use of Active Shape Models for Locating Structures in Medical Images , 1993, IPMI.

[22]  Donald Geman,et al.  Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images , 1984, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[23]  Alex Pentland,et al.  Probabilistic Visual Learning for Object Representation , 1997, IEEE Trans. Pattern Anal. Mach. Intell..

[24]  S. Resnick,et al.  One-year age changes in MRI brain volumes in older adults. , 2000, Cerebral cortex.