Regulation of bifurcating B cell trajectories by mutual antagonism between transcription factors IRF4 and IRF8

Upon recognition of antigen, B cells undertake a bifurcated response in which some cells rapidly differentiate into plasmablasts while others undergo affinity maturation in germinal centers (GCs). Here we identified a double-negative feedback loop between the transcription factors IRF4 and IRF8 that regulated the initial developmental bifurcation of activated B cells as well as the GC response. IRF8 dampened signaling via the B cell antigen receptor (BCR), facilitated antigen-specific interaction with helper T cells, and promoted antibody affinity maturation while antagonizing IRF4-driven differentiation of plasmablasts. Genomic analysis revealed concentration-dependent actions of IRF4 and IRF8 in regulating distinct gene-expression programs. Stochastic modeling suggested that the double-negative feedback was sufficient to initiate bifurcation of the B cell developmental trajectories.

[1]  K. Lam,et al.  Leupaxin Negatively Regulates B Cell Receptor Signaling* , 2007, Journal of Biological Chemistry.

[2]  D. Allen,et al.  Antibody engineering for the analysis of affinity maturation of an anti‐hapten response. , 1988, The EMBO journal.

[3]  Chen-feng Qi,et al.  IFN Regulatory Factor 8 Restricts the Size of the Marginal Zone and Follicular B Cell Pools , 2011, The Journal of Immunology.

[4]  S. Rutz,et al.  A Genomic Regulatory Element That Directs Assembly and Function of Immune-Specific AP-1–IRF Complexes , 2012, Science.

[5]  T. Elston,et al.  Stochasticity in gene expression: from theories to phenotypes , 2005, Nature Reviews Genetics.

[6]  Roger Sciammas,et al.  Graded expression of interferon regulatory factor-4 coordinates isotype switching with plasma cell differentiation. , 2006, Immunity.

[7]  P. Lipsky,et al.  Regulation of the germinal center gene program by interferon (IFN) regulatory factor 8/IFN consensus sequence-binding protein , 2008, Journal of Experimental Medicine.

[8]  P. Lipsky,et al.  IL-21 Induces Differentiation of Human Naive and Memory B Cells into Antibody-Secreting Plasma Cells1 , 2005, The Journal of Immunology.

[9]  S. Pillai,et al.  Marginal zone B cells. , 2005, Annual review of immunology.

[10]  P. Lipsky,et al.  Regulation of the germinal center gene program by interferon (IFN) regulatory factor 8/IFN consensus sequence-binding protein , 2006, The Journal of experimental medicine.

[11]  M. Hibbs,et al.  Lyn tyrosine kinase: accentuating the positive and the negative. , 2005, Immunity.

[12]  Klaus Rajewsky,et al.  A B cell-deficient mouse by targeted disruption of the membrane exon of the immunoglobulin μ chain gene , 1991, Nature.

[13]  R. Germain,et al.  B-cell follicle development remodels the conduit system and allows soluble antigen delivery to follicular dendritic cells. , 2009, Blood.

[14]  R. Lu,et al.  A Role for IRF8 in B Cell Anergy , 2013, The Journal of Immunology.

[15]  D. Calado,et al.  Germinal Centers , 2017, Methods in Molecular Biology.

[16]  T. Mak,et al.  The development of inflammatory TH-17 cells requires interferon-regulatory factor 4 , 2007, Nature Immunology.

[17]  G. Kelsoe,et al.  In situ studies of the primary immune response to (4-hydroxy-3- nitrophenyl)acetyl. I. The architecture and dynamics of responding cell populations , 1991, The Journal of experimental medicine.

[18]  L. Glimcher,et al.  The endoplasmic reticulum stress response in immunity and autoimmunity , 2008, Nature Reviews Immunology.

[19]  Qingshan Li,et al.  Transcription Factor IRF 8 Directs a Silencing Programme for TH 17 Cell Differentiation , 2011 .

[20]  Qingshan Li,et al.  Transcription factor IRF8 directs a silencing programme for TH17 cell differentiation , 2011, Nature communications.

[21]  Y. Li,et al.  An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling , 2011, Molecular systems biology.

[22]  D. Gillespie The chemical Langevin equation , 2000 .

[23]  Hai Qi,et al.  T–B-cell entanglement and ICOSL-driven feed-forward regulation of germinal centre reaction , 2014, Nature.

[24]  J. Choe,et al.  IL‐10 interrupts memory B cell expansion in the germinal center by inducing differentiation into plasma cells , 1998, European journal of immunology.

[25]  Wei Shi,et al.  The transcription factors IRF8 and PU.1 negatively regulate plasma cell differentiation , 2014, The Journal of experimental medicine.

[26]  E. Kremmer,et al.  Nuclear and cytoplasmic AID in extrafollicular and germinal center B cells. , 2006, Blood.

[27]  Hai Qi,et al.  SAP-Regulated T Cell–APC Adhesion and Ligation-Dependent and -Independent Ly108–CD3ζ Interactions , 2014, The Journal of Immunology.

[28]  W. Baldwin,et al.  B Cell Deficiency Confers Protection from Renal Ischemia Reperfusion Injury 1 , 2003, The Journal of Immunology.

[29]  Harinder Singh,et al.  The molecular choreography of IRF4 and IRF8 with immune system partners. , 2013, Cold Spring Harbor symposia on quantitative biology.

[30]  K. Toellner,et al.  Extrafollicular antibody responses , 2003, Immunological reviews.

[31]  Aly A. Khan,et al.  Transcriptional programming of dendritic cells for enhanced MHC class II antigen presentation , 2013, Nature Immunology.

[32]  U. Klein,et al.  Article Transcriptional Regulation of Germinal Center B and Plasma Cell Fates by Dynamical Control of Irf4 , 2022 .

[33]  M. Shlomchik,et al.  B Cell Receptor Signal Transduction in the GC Is Short-Circuited by High Phosphatase Activity , 2012, Science.