C2-domains, Structure and Function of a Universal Ca2+-binding Domain*

A vast amount of protein sequence data accumulated over recent years has revealed that protein modules are widespread in nature. Many intracellular and extracellular proteins consist, in part or fully, of combinations of protein modules. C2-domains, together with SH2, PTB, PH, SH3, WW, and PDZ domains, are typical examples of intracellular protein modules. These modules form independently folding domains of 80–160 residues with characteristic binding properties; C2-domains bind Ca 21 and phospholipids, SH2 and PTB domains phosphotyrosine-containing sequences, PH domains phosphatidylinositol phosphates, SH3 and WW domains proline-rich sequences, and PDZ domains C-terminal sequences. C2-domains are unique among these modules because phospholipid binding to many C2-domains is regulated by Ca . For this reason, C2-domains are sometimes referred to as Ca -dependent lipid binding domains. However, C2-domains are not obligatory Ca and phospholipid-binding modules. C2-domains have diverged evolutionarily into Ca-dependent and Ca-independent forms that interact with multiple targets. Thus, although most C2-domains are probably Ca-binding domains, they represent a family of versatile protein modules with diverse functions. C2-domains comprise approximately 130 residues and were first identified in protein kinase C (1). Close to 100 C2-domain sequences are listed in the current data banks. Although reviews of several C2-domain proteins have been published (2–11), recent results on the structure and interactions of C2-domains by x-ray crystallography and NMR spectroscopy offer a new opportunity to rationalize the properties of C2-domains in structural terms. In this minireview, we will attempt to use this opportunity and correlate the functional properties of C2-domains with their structures.

[1]  J. Falke,et al.  Ca2+-signaling cycle of a membrane-docking C2 domain. , 1997, Biochemistry.

[2]  J. Rothman,et al.  A possible docking and fusion particle for synaptic transmission , 1995, Nature.

[3]  R. Kretsinger EF-hands reach out , 1996, Nature Structural Biology.

[4]  Roger L. Williams,et al.  A ternary metal binding site in the C2 domain of phosphoinositide-specific phospholipase C-delta1. , 1997, Biochemistry.

[5]  K. Mikoshiba,et al.  Inositol-1,3,4,5-tetrakisphosphate binding to C2B domain of IP4BP/synaptotagmin II. , 1994, The Journal of biological chemistry.

[6]  T. Südhof,et al.  Mammalian Homologues of Caenorhabditis elegans unc-13 Gene Define Novel Family of C2-domain Proteins (*) , 1995, The Journal of Biological Chemistry.

[7]  J. D. Clark,et al.  A novel arachidonic acid-selective cytosolic PLA2 contains a Ca2+-dependent translocation domain with homology to PKC and GAP , 1991, Cell.

[8]  T. Südhof,et al.  Domain structure of synaptotagmin (p65) , 1991, The Journal of biological chemistry.

[9]  G. A. Martin,et al.  Molecular cloning of two types of GAP complementary DNA from human placenta. , 1988, Science.

[10]  T. Südhof,et al.  A single C2 domain from synaptotagmin I is sufficient for high affinity Ca2+/phospholipid binding. , 1993, The Journal of biological chemistry.

[11]  Y. Nishizuka,et al.  The molecular heterogeneity of protein kinase C and its implications for cellular regulation , 1988, Nature.

[12]  J. Falke,et al.  The C2 domain calcium‐binding motif: Structural and functional diversity , 1996, Protein science : a publication of the Protein Society.

[13]  C. Ponting,et al.  Extending the C2 domain family: C2s in PKCs δ, ϵ,η,θ, phospholipases, GAPs, and perforin , 1996, Protein science : a publication of the Protein Society.

[14]  W. Catterall,et al.  Interaction of the synprint site of N-type Ca2+ channels with the C2B domain of synaptotagmin I. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[15]  W. Chazin Releasing the calcium trigger , 1995, Nature Structural Biology.

[16]  Thomas C. Südhof,et al.  Rim is a putative Rab3 effector in regulating synaptic-vesicle fusion , 1997, Nature.

[17]  Thomas C. Südhof,et al.  Ca2+-dependent and -independent activities of neural and non-neural synaptotagmins , 1995, Nature.

[18]  S. Y. Lee,et al.  Studies of inositol phospholipid-specific phospholipase C. , 1989, Science.

[19]  Josep Rizo,et al.  Synaptotagmins: C2-Domain Proteins That Regulate Membrane Traffic , 1996, Neuron.

[20]  A. Newton,et al.  Regulation of protein kinase C. , 1997, Current opinion in cell biology.

[21]  A. Newton,et al.  Regulation of protein kinase C betaII by its C2 domain. , 1997, Biochemistry.

[22]  T. Südhof,et al.  Distinct Ca-dependent Properties of the First and Second C-domains of Synaptotagmin I (*) , 1996, The Journal of Biological Chemistry.

[23]  S. Volinia,et al.  Phosphatidylinositol 3-kinase: Structure and expression of the 110 kd catalytic subunit , 1992, Cell.

[24]  T. Südhof,et al.  The Evolutionary Pressure to Inactivate , 1997, The Journal of Biological Chemistry.

[25]  A. Ullrich,et al.  Multiple, distinct forms of bovine and human protein kinase C suggest diversity in cellular signaling pathways. , 1986, Science.

[26]  K. Kaibuchi,et al.  Rabphilin-3A, a putative target protein for smg p25A/rab3A p25 small GTP-binding protein related to synaptotagmin , 1993, Molecular and cellular biology.

[27]  T. Südhof,et al.  Synaptotagmin: a calcium sensor on the synaptic vesicle surface. , 1992, Science.

[28]  S. Rhee,et al.  Significance of PIP2 hydrolysis and regulation of phospholipase C isozymes. , 1995, Current opinion in cell biology.

[29]  G Chelvanayagam,et al.  A predicted consensus structure for the protein kinase C2 homology (C2H) domain, the repeating unit of synaptotagmin , 1995, Proteins.

[30]  R. Kriz,et al.  Delineation of two functionally distinct domains of cytosolic phospholipase A2, a regulatory Ca(2+)-dependent lipid-binding domain and a Ca(2+)-independent catalytic domain. , 1994, The Journal of biological chemistry.

[31]  J. D. Clark,et al.  Cytosolic phospholipase A2. , 1995, Journal of lipid mediators and cell signalling.

[32]  Richard G. W. Anderson,et al.  Synaptotagmin I is a high affinity receptor for clathrin AP-2: Implications for membrane recycling , 1994, Cell.

[33]  Thomas C. Südhof,et al.  The synaptic vesicle cycle: a cascade of protein–protein interactions , 1995, Nature.

[34]  T. Südhof,et al.  Ca(2+)-dependent conformational change in synaptotagmin I. , 1994, The Journal of biological chemistry.

[35]  T. Südhof,et al.  Synaptotagmin I: A major Ca2+ sensor for transmitter release at a central synapse , 1994, Cell.

[36]  T. Südhof,et al.  Synaptotagmin–Syntaxin Interaction: The C2 Domain as a Ca2+-Dependent Electrostatic Switch , 1997, Neuron.

[37]  T. Südhof,et al.  Bipartite Ca2+-Binding Motif in C2 Domains of Synaptotagmin and Protein Kinase C , 1996, Science.

[38]  W. Somers,et al.  Independent Folding and Ligand Specificity of the C2 Calciumdependent Lipid Binding Domain of Cytosolic Phospholipase A2 * , 1998, The Journal of Biological Chemistry.

[39]  T. Südhof,et al.  Distinct Ca2+ and Sr2+ Binding Properties of Synaptotagmins , 1995, The Journal of Biological Chemistry.

[40]  R. Kriz,et al.  Cloning and expression of multiple protein kinase C cDNAs , 1986, Cell.

[41]  M. Bycroft,et al.  Crystal Structure of a Calcium-Phospholipid Binding Domain from Cytosolic Phospholipase A2* , 1998, The Journal of Biological Chemistry.

[42]  G. Nelsestuen,et al.  Association of protein kinase C with phospholipid vesicles. , 1987, Biochemistry.

[43]  H. Yeger,et al.  The C2 Domain of the Ubiquitin Protein Ligase Nedd4 Mediates Ca2+-dependent Plasma Membrane Localization* , 1997, The Journal of Biological Chemistry.

[44]  Roger L. Williams,et al.  Crystal structure of a mammalian phosphoinositide-specific phospholipase Cδ , 1996, Nature.

[45]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[46]  J. Hurley,et al.  C2 domain conformational changes in phospholipase C-δ1 , 1996, Nature Structural Biology.

[47]  J. H. Schwartz,et al.  Ca(2+)-independent protein kinase Cs contain an amino-terminal domain similar to the C2 consensus sequence. , 1993, Trends in biochemical sciences.

[48]  S. Sprang,et al.  Structure of the first C2 domain of synaptotagmin I: A novel Ca2+/phospholipid-binding fold , 1995, Cell.

[49]  T. Südhof,et al.  Phospholipid binding by a synaptic vesicle protein homologous to the regulatory region of protein kinase C , 1990, Nature.