Proteomic Signature of Host Response to SARS-CoV-2 Infection in the Nasopharynx
暂无分享,去创建一个
A. Pandey | A. Madugundu | H. Ebihara | P. Vanderboom | D. Mun | M. Saraswat | Jie Sun | Anil K. Madugundu | Kishore Garapati | R. Chakraborty | K. Mangalaparthi | A. Pandey | A. Pandey | Kiran K. Mangalaparthi
[1] A. Pandey,et al. A mass spectrometry-based targeted assay for detection of SARS-CoV-2 antigen from clinical specimens , 2021, EBioMedicine.
[2] A. Rule,et al. Mass Spectrometric Analysis of Urine from COVID-19 Patients for Detection of SARS-CoV-2 Viral Antigen and to Study Host Response , 2021, Journal of proteome research.
[3] Qin Zhang,et al. Control of , 2021, Agriculture Automation and Control.
[4] K. Cardozo,et al. Establishing a mass spectrometry-based system for rapid detection of SARS-CoV-2 in large clinical sample cohorts , 2020, Nature Communications.
[5] Dain R. Brademan,et al. Large-Scale Multi-omic Analysis of COVID-19 Severity , 2020, Cell Systems.
[6] C. Borchers,et al. Mass-Spectrometric Detection of SARS-CoV-2 Virus in Scrapings of the Epithelium of the Nasopharynx of Infected Patients via Nucleocapsid N Protein , 2020, Journal of proteome research.
[7] D. Dash,et al. A rapid and sensitive method to detect SARS-CoV-2 virus using targeted-mass spectrometry , 2020, Journal of Proteins and Proteomics.
[8] Nicolas Carlier,et al. Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients , 2020, Science.
[9] Christoph Bock,et al. Structural cells are key regulators of organ-specific immune response , 2020, Nature.
[10] Roland Eils,et al. COVID-19 severity correlates with airway epithelium–immune cell interactions identified by single-cell analysis , 2020, Nature Biotechnology.
[11] A. Sanyaolu,et al. Comorbidity and its Impact on Patients with COVID-19 , 2020, SN Comprehensive Clinical Medicine.
[12] Andrew R. Leach,et al. The Global Phosphorylation Landscape of SARS-CoV-2 Infection , 2020, Cell.
[13] Laura J. Simpson,et al. A single-cell atlas of the peripheral immune response in patients with severe COVID-19 , 2020, Nature Medicine.
[14] Matthew D. Li,et al. Pulmonary Vascular Manifestations of COVID-19 Pneumonia , 2020, Radiology. Cardiothoracic imaging.
[15] Akiko Iwasaki,et al. Type I and Type III Interferons – Induction, Signaling, Evasion, and Application to Combat COVID-19 , 2020, Cell Host & Microbe.
[16] Axel Haverich,et al. Pulmonary Vascular Endothelialitis, Thrombosis, and Angiogenesis in Covid-19. , 2020, The New England journal of medicine.
[17] Thomas Becker,et al. Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2 , 2020, Science.
[18] R. Schwartz,et al. Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19 , 2020, Cell.
[19] Benjamin J. Polacco,et al. A SARS-CoV-2 Protein Interaction Map Reveals Targets for Drug-Repurposing , 2020, Nature.
[20] Ritesh Gupta,et al. Diabetes in COVID-19: Prevalence, pathophysiology, prognosis and practical considerations , 2020, Diabetes & Metabolic Syndrome: Clinical Research & Reviews.
[21] Dong Yang,et al. Comparative replication and immune activation profiles of SARS-CoV-2 and SARS-CoV in human lungs: an ex vivo study with implications for the pathogenesis of COVID-19 , 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[22] Kai Liu,et al. Clinical features of COVID-19 in elderly patients: A comparison with young and middle-aged patients , 2020, Journal of Infection.
[23] K. Morizono,et al. Hippo Signaling Pathway has a critical role in Zika Virus Replication and in the Pathogenesis of Neuroinflammation , 2020, The American journal of pathology.
[24] E. Holmes,et al. Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding , 2020, The Lancet.
[25] Y. Hu,et al. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China , 2020, The Lancet.
[26] A. Nusrat,et al. Innate immune cell-epithelial crosstalk during wound repair. , 2019, The Journal of clinical investigation.
[27] E. O'Toole,et al. FAP57/WDR65 targets assembly of a subset of inner arm dyneins and connects to regulatory hubs in cilia , 2019, bioRxiv.
[28] Chasity E Trammell,et al. Early Steps in Herpes Simplex Virus Infection Blocked by a Proteasome Inhibitor , 2019, mBio.
[29] M. Diamond,et al. Shared and Distinct Functions of Type I and Type III Interferons. , 2019, Immunity.
[30] Hanqing Liu,et al. The Hippo signaling effector WWTR1 is a metastatic biomarker of gastric cardia adenocarcinoma , 2019, Cancer Cell International.
[31] M. Burkard,et al. Polo-like kinase 4 maintains centriolar satellite integrity by phosphorylation of centrosomal protein 131 (CEP131) , 2019, The Journal of Biological Chemistry.
[32] R. Maciewicz,et al. Upper Airway Cell Transcriptomics Identify a Major New Immunological Phenotype with Strong Clinical Correlates in Young Children with Acute Wheezing , 2019, The Journal of Immunology.
[33] H. Wang,et al. Repurposing host-based therapeutics to control coronavirus and influenza virus , 2019, Drug Discovery Today.
[34] Bin Zhou,et al. PSMB1 Negatively Regulates the Innate Antiviral Immunity by Facilitating Degradation of IKK-ε , 2019, Viruses.
[35] Martin Eisenacher,et al. The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..
[36] C. Coyne,et al. Type III interferon signaling restricts enterovirus 71 infection of goblet cells , 2018, Science Advances.
[37] Tamir Chandra,et al. Inhibition of the 60S ribosome biogenesis GTPase LSG1 causes endoplasmic reticular disruption and cellular senescence , 2018, bioRxiv.
[38] C. Hellen,et al. Release of Ubiquitinated and Non-ubiquitinated Nascent Chains from Stalled Mammalian Ribosomal Complexes by ANKZF1 and Ptrh1. , 2018, Molecular cell.
[39] Qi Tang,et al. Pleiotropic roles of the ubiquitin-proteasome system during viral propagation , 2018, Life Sciences.
[40] H. Qiu,et al. RING-Domain E3 Ligase-Mediated Host–Virus Interactions: Orchestrating Immune Responses by the Host and Antagonizing Immune Defense by Viruses , 2018, Front. Immunol..
[41] J. Saiz,et al. Pharmacological Inhibition of Protein Kinase C Reduces West Nile Virus Replication , 2018, Viruses.
[42] M. Gale,et al. Interferon Lambda Genetics and Biology in Regulation of Viral Control , 2017, Front. Immunol..
[43] C. Arias,et al. The Ubiquitin-Proteasome System Is Necessary for Efficient Replication of Human Astrovirus , 2017, Journal of Virology.
[44] Dianjun Cao,et al. ISG15 Modulates Type I Interferon Signaling and the Antiviral Response during Hepatitis E Virus Replication , 2017, Journal of Virology.
[45] S. Perlman,et al. Pathogenic human coronavirus infections: causes and consequences of cytokine storm and immunopathology , 2017, Seminars in Immunopathology.
[46] F. Rieux-Laucat,et al. Detection of interferon alpha protein reveals differential levels and cellular sources in disease , 2017, The Journal of experimental medicine.
[47] Rickey E Carter,et al. Enhanced Protein Translation Underlies Improved Metabolic and Physical Adaptations to Different Exercise Training Modes in Young and Old Humans. , 2017, Cell metabolism.
[48] M. Peppelenbosch,et al. Transcriptional Regulation of Antiviral Interferon-Stimulated Genes , 2017, Trends in Microbiology.
[49] M. A. Yousuf,et al. Protein Kinase C Signaling in Adenoviral Infection. , 2016, Biochemistry.
[50] D. Falzarano,et al. SARS and MERS: recent insights into emerging coronaviruses , 2016, Nature Reviews Microbiology.
[51] H. Augustin,et al. Endothelial RSPO3 Controls Vascular Stability and Pruning through Non-canonical WNT/Ca(2+)/NFAT Signaling. , 2016, Developmental cell.
[52] Masafumi Sanefuji,et al. Moyamoya disease susceptibility gene RNF213 links inflammatory and angiogenic signals in endothelial cells , 2015, Scientific Reports.
[53] D. Taura,et al. Biochemical and Functional Characterization of RNF213 (Mysterin) R4810K, a Susceptibility Mutation of Moyamoya Disease, in Angiogenesis In Vitro and In Vivo , 2015, Journal of the American Heart Association.
[54] Y. Crow,et al. Aicardi–Goutières syndrome and the type I interferonopathies , 2015, Nature Reviews Immunology.
[55] D. Hui,et al. Middle East respiratory syndrome , 2015, The Lancet.
[56] Albert C. Huang,et al. Interferon-λ restricts West Nile virus neuroinvasion by tightening the blood-brain barrier , 2015, Science Translational Medicine.
[57] Birk Diedenhofen,et al. cocor: A Comprehensive Solution for the Statistical Comparison of Correlations , 2015, PloS one.
[58] Brian L. Mark,et al. Crystal Structure of the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Papain-like Protease Bound to Ubiquitin Facilitates Targeted Disruption of Deubiquitinating Activity to Demonstrate Its Role in Innate Immune Suppression , 2014, The Journal of Biological Chemistry.
[59] T. Fung,et al. Coronavirus-induced ER stress response and its involvement in regulation of coronavirus–host interactions , 2014, Virus Research.
[60] Z. Memish,et al. Clinical aspects and outcomes of 70 patients with Middle East respiratory syndrome coronavirus infection: a single-center experience in Saudi Arabia , 2014, International Journal of Infectious Diseases.
[61] M. Steinert,et al. Microbial Peptidyl-Prolyl cis/trans Isomerases (PPIases): Virulence Factors and Potential Alternative Drug Targets , 2014, Microbiology and Molecular Reviews.
[62] Boram Lee,et al. Synergistic Up-Regulation of CXCL10 by Virus and IFN γ in Human Airway Epithelial Cells , 2014, PloS one.
[63] G. Mills,et al. Coordinate phosphorylation of multiple residues on single AKT1 and AKT2 molecules , 2014, Oncogene.
[64] H. Mostafa,et al. HSV-1 ICP0: An E3 Ubiquitin Ligase That Counteracts Host Intrinsic and Innate Immunity , 2014, Cells.
[65] Jihad Ghandour,et al. Middle East Respiratory Syndrome Coronavirus: A Case-Control Study of Hospitalized Patients , 2014, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[66] L. Ivashkiv,et al. Regulation of type I interferon responses , 2013, Nature Reviews Immunology.
[67] Yang Yang,et al. The structural and accessory proteins M, ORF 4a, ORF 4b, and ORF 5 of Middle East respiratory syndrome coronavirus (MERS-CoV) are potent interferon antagonists , 2013, Protein & Cell.
[68] H. Schaal,et al. Make Yourself at Home: Viral Hijacking of the PI3K/Akt Signaling Pathway , 2013, Viruses.
[69] Z. Memish,et al. Epidemiological, demographic, and clinical characteristics of 47 cases of Middle East respiratory syndrome coronavirus disease from Saudi Arabia: a descriptive study , 2013, The Lancet Infectious Diseases.
[70] B. Fontoura,et al. Nuclear Imprisonment: Viral Strategies to Arrest Host mRNA Nuclear Export , 2013, Viruses.
[71] Steven A Carr,et al. Integrated proteomic analysis of post-translational modifications by serial enrichment , 2013, Nature Methods.
[72] Takeshi Tomonaga,et al. Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project. , 2013, Journal of proteome research.
[73] M. Peng,et al. Toward a comprehensive characterization of a human cancer cell phosphoproteome. , 2013, Journal of proteome research.
[74] Simon Yu,et al. INTERFEROME v2.0: an updated database of annotated interferon-regulated genes , 2012, Nucleic Acids Res..
[75] L. Terracciano,et al. Interferon-γ-stimulated genes, but not USP18, are expressed in livers of patients with acute hepatitis C. , 2012, Gastroenterology.
[76] C. Rice,et al. Interferon-stimulated genes and their antiviral effector functions , 2011, Current Opinion in Virology.
[77] D. Walsh,et al. Viral subversion of the host protein synthesis machinery , 2011, Nature Reviews Microbiology.
[78] A. Fujiyama,et al. Identification of RNF213 as a Susceptibility Gene for Moyamoya Disease and Its Possible Role in Vascular Development , 2011, PloS one.
[79] Yan Zhou,et al. Regulation of influenza A virus induced CXCL-10 gene expression requires PI3K/Akt pathway and IRF3 transcription factor. , 2011, Molecular immunology.
[80] I. Zagon,et al. T lymphocyte proliferation is suppressed by the opioid growth factor ([Met(5)]-enkephalin)-opioid growth factor receptor axis: implication for the treatment of autoimmune diseases. , 2011, Immunobiology.
[81] L. Duret,et al. Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia , 2010, BMC Genomics.
[82] M. Belvisi,et al. TNFα and IFNγ synergistically enhance transcriptional activation of CXCL10 in human airway smooth muscle cells via STAT-1, NF-κB, and the transcriptional coactivator CREB-binding protein. , 2010, The Journal of biological chemistry.
[83] M. Belvisi,et al. TNFα and IFNγ Synergistically Enhance Transcriptional Activation of CXCL10 in Human Airway Smooth Muscle Cells via STAT-1, NF-κB, and the Transcriptional Coactivator CREB-binding Protein , 2010, The Journal of Biological Chemistry.
[84] Stephan Ludwig,et al. The Clinically Approved Proteasome Inhibitor PS-341 Efficiently Blocks Influenza A Virus and Vesicular Stomatitis Virus Propagation by Establishing an Antiviral State , 2010, Journal of Virology.
[85] J. Drijfhout,et al. The Ubiquitin-Proteasome System Plays an Important Role during Various Stages of the Coronavirus Infection Cycle , 2010, Journal of Virology.
[86] Brendan MacLean,et al. Bioinformatics Applications Note Gene Expression Skyline: an Open Source Document Editor for Creating and Analyzing Targeted Proteomics Experiments , 2022 .
[87] J. Chu,et al. Small interference RNA profiling reveals the essential role of human membrane trafficking genes in mediating the infectious entry of dengue virus , 2010, Virology Journal.
[88] Marcus Groettrup,et al. The Proteasome Inhibitor Bortezomib Enhances the Susceptibility to Viral Infection1 , 2009, The Journal of Immunology.
[89] I. Zagon,et al. Opioid growth factor-opioid growth factor receptor axis is a physiological determinant of cell proliferation in diverse human cancers. , 2009, American journal of physiology. Regulatory, integrative and comparative physiology.
[90] Jimmy K. Eng,et al. Quantitative Phosphoproteomic Analysis of T Cell Receptor Signaling Reveals System-Wide Modulation of Protein-Protein Interactions , 2009, Science Signaling.
[91] B. Ahn,et al. PKR protein kinase is activated by hepatitis C virus and inhibits viral replication through translational control. , 2009, Virus research.
[92] R. Johnston,et al. Severe Acute Respiratory Syndrome Coronavirus Papain-Like Protease Ubiquitin-Like Domain and Catalytic Domain Regulate Antagonism of IRF3 and NF-κB Signaling , 2009, Journal of Virology.
[93] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[94] T. McClintock,et al. Tissue expression patterns identify mouse cilia genes. , 2008, Physiological genomics.
[95] I. Zagon,et al. The opioid growth factor (OGF)-OGF receptor axis uses the p16 pathway to inhibit head and neck cancer. , 2007, Cancer research.
[96] T. Asselah,et al. Liver gene expression signature to predict response to pegylated interferon plus ribavirin combination therapy in patients with chronic hepatitis C , 2007, Gut.
[97] R. Baric,et al. Severe Acute Respiratory Syndrome Coronavirus Evades Antiviral Signaling: Role of nsp1 and Rational Design of an Attenuated Strain , 2007, Journal of Virology.
[98] H. Klenk,et al. Control of apoptosis in influenza virus-infected cells by up-regulation of Akt and p53 signaling , 2007, Apoptosis.
[99] M. Barro,et al. Rotavirus NSP1 Inhibits Expression of Type I Interferon by Antagonizing the Function of Interferon Regulatory Factors IRF3, IRF5, and IRF7 , 2007, Journal of Virology.
[100] Johannes G. Bode,et al. Influenza A Virus NS1 Protein Activates the PI3K/Akt Pathway To Mediate Antiapoptotic Signaling Responses , 2007, Journal of Virology.
[101] Yan Zhou,et al. Influenza A virus NS1 protein activates the phosphatidylinositol 3-kinase (PI3K)/Akt pathway by direct interaction with the p85 subunit of PI3K. , 2007, The Journal of general virology.
[102] S. Schneider‐Schaulies,et al. Measles virus induces expression of SIP110, a constitutively membrane clustered lipid phosphatase, which inhibits T cell proliferation , 2006, Cellular microbiology.
[103] Richard E. Randall,et al. Influenza A virus NS1 protein binds p85β and activates phosphatidylinositol-3-kinase signaling , 2006, Proceedings of the National Academy of Sciences.
[104] Krishna Shankara Narayanan,et al. Severe acute respiratory syndrome coronavirus nsp1 protein suppresses host gene expression by promoting host mRNA degradation , 2006, Proceedings of the National Academy of Sciences.
[105] H. Hotta,et al. A novel family of membrane-bound E3 ubiquitin ligases. , 2006, Journal of biochemistry.
[106] G. Gao,et al. The ubiquitin-proteasome pathway in viral infections. , 2006, Canadian journal of physiology and pharmacology.
[107] L. Babiuk,et al. Influenza A virus NS 1 protein activates the phosphatidylinositol 3-kinase ( PI 3 K ) / Akt pathway by direct interaction with the p 85 subunit of PI 3 K , 2006 .
[108] Yoshikazu Tanaka,et al. Cell‐Specific Inhibition of Paramyxovirus Maturation by Proteasome Inhibitors , 2005, Microbiology and immunology.
[109] P. Evans. Regulation of pro-inflammatory signalling networks by ubiquitin: identification of novel targets for anti-inflammatory drugs , 2005, Expert Reviews in Molecular Medicine.
[110] M. Ng,et al. Proliferative growth of SARS coronavirus in Vero E6 cells. , 2003, The Journal of general virology.
[111] Y. Guan,et al. Coronavirus as a possible cause of severe acute respiratory syndrome , 2003, The Lancet.
[112] A. Lewis-Antes,et al. IFN-λs mediate antiviral protection through a distinct class II cytokine receptor complex , 2003, Nature Immunology.
[113] P. De Camilli,et al. Epidermal growth factor pathway substrate 15, Eps15. , 1999, The international journal of biochemistry & cell biology.
[114] Jeremy Luban,et al. Human immunodeficiency virus type 1 Gag protein binds to cyclophilins A and B , 1993, Cell.
[115] H. S. Kaye,et al. Detection of Coronavirus 229E Antibody by Indirect Hemagglutination , 1972 .
[116] H. S. Kaye,et al. Detection of coronavirus 229E antibody by indirect hemagglutination. , 1972, Applied microbiology.
[117] D. Hamre,et al. A New Virus Isolated from the Human Respiratory Tract.∗ , 1966, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.