Information theory based approaches to cellular signaling.

[1]  C. E. SHANNON,et al.  A mathematical theory of communication , 1948, MOCO.

[2]  W. J. McGill Multivariate information transmission , 1954, Trans. IRE Prof. Group Inf. Theory.

[3]  Jose Luis Beltran Guerrero,et al.  Multivariate mutual information , 1994 .

[4]  Martin J. Wainwright,et al.  Visual adaptation as optimal information transmission , 1999, Vision Research.

[5]  Alexander Borst,et al.  Information theory and neural coding , 1999, Nature Neuroscience.

[6]  A. Løbner-Olesen,et al.  Distribution of minichromosomes in individual Escherichia coli cells: implications for replication control , 1999, The EMBO journal.

[7]  H Herzel,et al.  Information content of protein sequences. , 2000, Journal of theoretical biology.

[8]  L. Serrano,et al.  Engineering stability in gene networks by autoregulation , 2000, Nature.

[9]  P. Swain,et al.  Intrinsic and extrinsic contributions to stochasticity in gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[10]  P. Swain,et al.  Stochastic Gene Expression in a Single Cell , 2002, Science.

[11]  J. Paulsson Summing up the noise in gene networks , 2004, Nature.

[12]  David J. C. MacKay,et al.  Information Theory, Inference, and Learning Algorithms , 2004, IEEE Transactions on Information Theory.

[13]  Xiufen Zou,et al.  A theoretical framework for specificity in cell signaling , 2005, Molecular systems biology.

[14]  E. Klipp,et al.  Integrative model of the response of yeast to osmotic shock , 2005, Nature Biotechnology.

[15]  Axel Kowald,et al.  A modelling approach to quantify dynamic crosstalk between the pheromone and the starvation pathway in baker's yeast , 2006, The FEBS journal.

[16]  Megan N. McClean,et al.  Cross-talk and decision making in MAP kinase pathways , 2007, Nature Genetics.

[17]  I. Nemenman,et al.  Optimal Signal Processing in Small Stochastic Biochemical Networks , 2006, PloS one.

[18]  Xiufen Zou,et al.  Mathematical models of specificity in cell signaling. , 2007, Biophysical journal.

[19]  H. Tamaki Glucose-stimulated cAMP-protein kinase A pathway in yeast Saccharomyces cerevisiae. , 2007, Journal of bioscience and bioengineering.

[20]  Martin Brown,et al.  Information-theoretic sensitivity analysis: a general method for credit assignment in complex networks , 2007, Journal of The Royal Society Interface.

[21]  W. Bialek,et al.  Information flow and optimization in transcriptional regulation , 2007, Proceedings of the National Academy of Sciences.

[22]  Tom Lenaerts,et al.  Information theoretical quantification of cooperativity in signalling complexes , 2009, BMC Systems Biology.

[23]  R. Yu,et al.  Fus3 generates negative feedback that improves information transmission in yeast pheromone response , 2008, Nature.

[24]  L. Serrano,et al.  Quantifying information transfer by protein domains: Analysis of the Fyn SH2 domain structure , 2008, BMC Structural Biology.

[25]  Hiroaki Kitano,et al.  Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway , 2009, Molecular systems biology.

[26]  Ned S Wingreen,et al.  Quantifying the Integration of Quorum-Sensing Signals with Single-Cell Resolution , 2009, PLoS biology.

[27]  Gasper Tkacik,et al.  Optimizing information flow in small genetic networks. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

[28]  Marina Vannucci,et al.  Information theory provides a comprehensive framework for the evaluation of protein structure predictions , 2009, Proteins.

[29]  Ned S Wingreen,et al.  Information processing and signal integration in bacterial quorum sensing , 2009, Molecular systems biology.

[30]  F. Tostevin,et al.  Mutual information between input and output trajectories of biochemical networks. , 2009, Physical review letters.

[31]  G. Vinnicombe,et al.  Fundamental limits on the suppression of molecular fluctuations , 2010, Nature.

[32]  J. Heinisch,et al.  Together we are strong—cell wall integrity sensors in yeasts , 2010, Yeast.

[33]  Optimizing Information Flow in Small Genetic Networks. II. Feed-forward Interactions , 2009, 0912.5500.

[34]  E. Klipp,et al.  Signal integration in budding yeast. , 2010, Biochemical Society transactions.

[35]  Samik Ghosh,et al.  A comprehensive molecular interaction map of the budding yeast cell cycle , 2010, Molecular systems biology.

[36]  Hiroaki Kitano,et al.  Fragilities Caused by Dosage Imbalance in Regulation of the Budding Yeast Cell Cycle , 2010, PLoS genetics.

[37]  Chih-yuan Chiang,et al.  A Human MAP Kinase Interactome , 2010, Nature Methods.

[38]  R. Levine,et al.  Maximal entropy inference of oncogenicity from phosphorylation signaling , 2010, Proceedings of the National Academy of Sciences.