Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny
暂无分享,去创建一个
J. Metcalf | R. Knight | N. Dominy | T. Goldberg | A. Gomez | E. Mallott | K. Amato | J. Lambert | R. Stumpf | S. Leigh | L. Swedell | Daniel McDonald | Gillian A. O. Britton | R. Knight | Elizabeth K. Mallott
[1] Amy Lu,et al. Reproductive hormones mediate changes in the gut microbiome during pregnancy and lactation in Phayre’s leaf monkeys , 2020, Scientific Reports.
[2] Abigail E. Asangba,et al. The Gut Microbiota Communities of Wild Arboreal and Ground-Feeding Tropical Primates Are Affected Differently by Habitat Disturbance , 2020, mSystems.
[3] R. Colman,et al. Age-related differences in the gut microbiome of Rhesus macaques. , 2020, The journals of gerontology. Series A, Biological sciences and medical sciences.
[4] R. Edwards,et al. The skin microbiome of elasmobranchs follows phylosymbiosis, but in teleost fishes, the microbiomes converge , 2019, Microbiome.
[5] Shen Jean Lim,et al. An introduction to phylosymbiosis , 2019, Proceedings of the Royal Society B.
[6] Stephanie L. Schnorr,et al. Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints , 2019, mSphere.
[7] S. Mazmanian,et al. Bacteroides fragilis polysaccharide A induces IL-10 secreting B and T cells that prevent viral encephalitis , 2019, Nature Communications.
[8] Víctor Arroyo-Rodríguez,et al. Ecological traits of the world’s primates , 2019, Scientific Data.
[9] A. Heintz‐Buschart,et al. Metabolites of lactic acid bacteria present in fermented foods are highly potent agonists of human hydroxycarboxylic acid receptor 3 , 2019, PLoS genetics.
[10] B. Bohannan,et al. Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology. , 2018, Trends in ecology & evolution.
[11] S. Mazmanian,et al. The Protective Role of Bacteroides fragilis in a Murine Model of Colitis-Associated Colorectal Cancer , 2018, mSphere.
[12] Mingxun Wang,et al. Qiita: rapid, web-enabled microbiome meta-analysis , 2018, Nature Methods.
[13] Se Jin Song,et al. Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes , 2018, The ISME Journal.
[14] A. Benson,et al. Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly , 2018, eLife.
[15] M. Blaser. The Past and Future Biology of the Human Microbiome in an Age of Extinctions , 2018, Cell.
[16] Rob Knight,et al. American Gut: an Open Platform for Citizen Science Microbiome Research , 2018, mSystems.
[17] Emily R. Davenport,et al. The human microbiome in evolution , 2017, BMC Biology.
[18] Rob Knight,et al. Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania , 2017, Science.
[19] S. Washburn,et al. Baboon Ecology and Human Evolution , 2017 .
[20] Jose A Navas-Molina,et al. Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns , 2017, mSystems.
[21] Jose A Navas-Molina,et al. Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping , 2017, mSystems.
[22] E. Alm,et al. Unraveling the processes shaping mammalian gut microbiomes over evolutionary time , 2017, Nature Communications.
[23] Howard Ochman,et al. Cospeciation of gut microbiota with hominids , 2016, Science.
[24] B. Hare,et al. Metabolic acceleration and the evolution of human brain size and life history , 2016, Nature.
[25] F. François,et al. Helicobacter pylori Eradication Causes Perturbation of the Human Gut Microbiome in Young Adults , 2016, PloS one.
[26] K. Amato. Incorporating the gut microbiota into models of human and non-human primate ecology and evolution. , 2016, American journal of physical anthropology.
[27] K. Theis,et al. Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes , 2015, PLoS biology.
[28] A Murat Eren,et al. The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes. , 2015, Cell reports.
[29] Rob Knight,et al. The microbiome of uncontacted Amerindians , 2015, Science Advances.
[30] Cecil M. Lewis,et al. Subsistence strategies in traditional societies distinguish gut microbiomes , 2015, Nature Communications.
[31] S. Benner,et al. Hominids adapted to metabolize ethanol long before human-directed fermentation , 2014, Proceedings of the National Academy of Sciences.
[32] H. Ochman,et al. Rapid changes in the gut microbiome during human evolution , 2014, Proceedings of the National Academy of Sciences.
[33] L. Aiello,et al. Evolution of early Homo: An integrated biological perspective , 2014, Science.
[34] Amanda G. Henry,et al. Gut microbiome of the Hadza hunter-gatherers , 2014, Nature Communications.
[35] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[36] M. Mangel,et al. FUNCTIONAL MORPHOLOGY, STABLE ISOTOPES, AND HUMAN EVOLUTION: A MODEL OF CONSILIENCE , 2012, Evolution; international journal of organic evolution.
[37] H. Ochman,et al. Sympatric chimpanzees and gorillas harbor convergent gut microbial communities , 2013, Genome research.
[38] D. Raubenheimer,et al. 30 Days in the Life: Daily Nutrient Balancing in a Wild Chacma Baboon , 2013, PloS one.
[39] B. Wood,et al. Isotopic evidence of early hominin diets , 2013, Proceedings of the National Academy of Sciences.
[40] B. Methé,et al. Analyses of the Stability and Core Taxonomic Memberships of the Human Microbiome , 2013, PloS one.
[41] J. Foster,et al. Gut–brain axis: how the microbiome influences anxiety and depression , 2013, Trends in Neurosciences.
[42] N. Dominy. Hominins living on the sedge , 2012, Proceedings of the National Academy of Sciences.
[43] A. Macpherson,et al. Interactions Between the Microbiota and the Immune System , 2012, Science.
[44] Bernard Henrissat,et al. Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome , 2012, PLoS Comput. Biol..
[45] T. Plummer,et al. A Papionin Multilevel Society as a Model for Hominin Social Evolution , 2012, International Journal of Primatology.
[46] J. Clemente,et al. Human gut microbiome viewed across age and geography , 2012, Nature.
[47] Michael L. Wilson,et al. Chimpanzees and Humans Harbor Compositionally Similar Gut Enterotypes , 2012, Nature Communications.
[48] Yusuke Murayama,et al. Unravelling cerebellar pathways with high temporal precision targeting motor and extensive sensory and parietal networks , 2012, Nature Communications.
[49] Eric P. Nawrocki,et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea , 2011, The ISME Journal.
[50] Tandy J. Warnow,et al. SEPP: SATe -Enabled Phylogenetic Placement , 2011, Pacific Symposium on Biocomputing.
[51] C. Huttenhower,et al. Metagenomic biomarker discovery and explanation , 2011, Genome Biology.
[52] P. Hugenholtz,et al. Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities , 2010, PLoS biology.
[53] S. Massart,et al. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa , 2010, Proceedings of the National Academy of Sciences.
[54] J. Doré,et al. Intestinal Microbiota of 6-week-old Infants Across Europe: Geographic Influence Beyond Delivery Mode, Breast-feeding, and Antibiotics , 2010, Journal of pediatric gastroenterology and nutrition.
[55] K. Südekum,et al. Indication of higher salivary α‐amylase expression in hamadryas baboons and geladas compared to chimpanzees and humans , 2010, Journal of medical primatology.
[56] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[57] S. Altmann. Fallback foods, eclectic omnivores, and the packaging problem. , 2009, American journal of physical anthropology.
[58] Richard W Wrangham,et al. The energetic significance of cooking. , 2009, Journal of human evolution.
[59] Richard W. Wrangham,et al. Catching Fire: How Cooking Made Us Human , 2009 .
[60] Les Dethlefsen,et al. The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing , 2008, PLoS biology.
[61] J. Lee-Thorp,et al. What Insights Can Baboon Feeding Ecology Provide for Early Hominin Niche Differentiation? , 2008, International Journal of Primatology.
[62] D. Richardson,et al. Plant Diversity in the Human Diet: Weak Phylogenetic Signal Indicates Breadth , 2008 .
[63] William R Leonard,et al. Effects of brain evolution on human nutrition and metabolism. , 2007, Annual review of nutrition.
[64] R. Dewar,et al. Weed macaques: The evolutionary implications of macaque feeding ecology , 1989, International Journal of Primatology.
[65] S. Elton. Forty years on and still going strong: the use of hominin-cercopithecid comparisons in palaeoanthropology , 2006 .
[66] R. Krishnamoorthy,et al. Polysaccharide digestion in cheek pouches of the bonnet macaque , 1975, Primates.
[67] C. Boesch,et al. Feeding ecology in apes and other primates , 2006 .
[68] Stephen R. Frost,et al. Neanderthal taxonomy reconsidered: implications of 3D primate models of intra- and interspecific differences. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[69] J. Lambert,et al. Digestive Retention Times in Forest Guenons (Cercopithecus spp.) with Reference to Chimpanzees (Pan troglodytes) , 2002, International Journal of Primatology.
[70] T. Plummer. Flaked stones and old bones: biological and cultural evolution at the dawn of technology. , 2004, American journal of physical anthropology.
[71] R. Wrangham,et al. 'Cooking as a biological trait'. , 2003, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.
[72] C. Kuzawa,et al. Metabolic correlates of hominid brain evolution. , 2003, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.
[73] L. Aiello,et al. ENERGETICS AND THE EVOLUTION OF THE GENUS HOMO , 2002 .
[74] J. Gordon,et al. How host-microbial interactions shape the nutrient environment of the mammalian intestine. , 2002, Annual review of nutrition.
[75] C. Jolly,et al. A proper study for mankind: Analogies from the Papionin monkeys and their implications for human evolution. , 2001, American journal of physical anthropology.
[76] J. Lambert. Primate digestion: Interactions among anatomy, physiology, and feeding ecology , 1998 .
[77] Stuart A. Altmann,et al. Foraging for survival : yearling baboons in Africa , 1998 .
[78] C. Kuzawa,et al. Adipose tissue in human infancy and childhood: an evolutionary perspective. , 1998, American journal of physical anthropology.
[79] W. Leonard,et al. Comparative primate energetics and hominid evolution. , 1997, American journal of physical anthropology.
[80] L. Aiello,et al. The Expensive-Tissue Hypothesis: The Brain and the Digestive System in Human and Primate Evolution , 1995, Current Anthropology.
[81] M. L. Robertson,et al. Evolutionary perspectives on human nutrition: The influence of brain and body size on diet and metabolism , 1994, American journal of human biology : the official journal of the Human Biology Council.
[82] R. Herrell. HIV/AIDS Research and the Social Sciences , 1991, Current Anthropology.
[83] D. Chivers,et al. Morphology of the gastrointestinal tract in primates: Comparisons with other mammals in relation to diet , 1980, Journal of morphology.
[84] M D Rose,et al. Bipedal behavior of olive baboons (Papio anubis) and its relevance to an understanding of the evolution of human bipedalism. , 1976, American journal of physical anthropology.
[85] P. Murray. The Role of Cheek Pouches in Cercopithecine Monkey Adaptive Strategy , 1975 .
[86] C. Jolly. The seed-eaters : a new model of hominid differentiation based on a baboon analogy , 1970 .
[87] R. Singer. African Ecology and Human Evolution. , 1964, Science.
[88] S. Washburn,et al. The Social Life of Baboons , 1961 .
[89] V. Reynolds,et al. The Social Life of Monkeys and Apes. , 1981 .
[90] A. S. Parkes. The Social Life of Monkeys and Apes , 1932, Nature.