论文信息 - Biochemical networks: the evolution of gene annotation. - 字舞流文

Biochemical networks: the evolution of gene annotation.

Complete and accurate annotation of gene function is an essential starting point for genome interpretation and a host of systems and synthetic biology endeavors. Detecting errors in existing annotation now has an important new tool.

Simon Kasif | Martin Steffen | S. Kasif | Martin Steffen

[1] Simon Kasif,et al. The art of gene function prediction , 2006, Nature Biotechnology.

[2] Tatiana A. Tatusova,et al. The National Center for Biotechnology Information's Protein Clusters Database , 2008, Nucleic Acids Res..

[3] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[4] U. Sauer,et al. Automatic policing of biochemical annotations using genomic correlations , 2009, Nature chemical biology.

[5] A. Godzik,et al. Computational protein function prediction: Are we making progress? , 2007, Cellular and Molecular Life Sciences.

[6] J. Szustakowski,et al. Computational identification of operons in microbial genomes. , 2002, Genome research.

[7] Michael Y. Galperin,et al. Who's your neighbor? New computational approaches for functional genomics , 2000, Nature Biotechnology.

[8] L. Holm,et al. The Pfam protein families database , 2005, Nucleic Acids Res..

[9] N. Sneige,et al. Author reply , 2007 .

[10] M. Gerstein,et al. A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data , 2003, Science.

[11] Naryttza N. Diaz,et al. The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes , 2005, Nucleic acids research.

[12] Richard J Roberts,et al. Identifying Protein Function—A Call for Community Action , 2004, PLoS biology.