Erratum: Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

[1]  Leif Andersson,et al.  Current perspectives and the future of domestication studies , 2014, Proceedings of the National Academy of Sciences.

[2]  Hong-Kyu Choi,et al.  Population Structure and Domestication Revealed by High-Depth Resequencing of Korean Cultivated and Wild Soybean Genomes , 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.

[3]  B. Cui,et al.  Wetland Degradation and Ecological Restoration , 2013, The Scientific World Journal.

[4]  Ying Li,et al.  A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity , 2013, Nature Genetics.

[5]  J. Foley,et al.  Yield Trends Are Insufficient to Double Global Crop Production by 2050 , 2013, PloS one.

[6]  Zhixi Tian,et al.  Cloning of Ln gene through combined approach of map-based cloning and association study in soybean. , 2013, Journal of genetics and genomics = Yi chuan xue bao.

[7]  Jun Wang,et al.  Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing , 2013, BMC Genomics.

[8]  S. Lee,et al.  Ln Is a Key Regulator of Leaflet Shape and Number of Seeds per Pod in Soybean[W] , 2012, Plant Cell.

[9]  D. K. Willis,et al.  Copy Number Variation of Multiple Genes at Rhg1 Mediates Nematode Resistance in Soybean , 2012, Science.

[10]  A. Fujiyama,et al.  A map of rice genome variation reveals the origin of cultivated rice , 2012, Nature.

[11]  Meng Li,et al.  Genetics and population analysis Advance Access publication July 13, 2012 , 2012 .

[12]  J. Chen,et al.  Genome-wide genetic changes during modern breeding of maize , 2012, Nature Genetics.

[13]  Xun Xu,et al.  Comparative population genomics of maize domestication and improvement , 2012, Nature Genetics.

[14]  Ji-Hong Kim,et al.  CNVRuler: a copy number variation-based case-control association analysis tool , 2012, Bioinform..

[15]  T. Yamazaki,et al.  Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering , 2012, Proceedings of the National Academy of Sciences.

[16]  A. Kikuchi,et al.  The Sg-1 Glycosyltransferase Locus Regulates Structural Diversity of Triterpenoid Saponins of Soybean[W][OA] , 2012, Plant Cell.

[17]  Y. Benjamini,et al.  Summarizing and correcting the GC content bias in high-throughput sequencing , 2012, Nucleic acids research.

[18]  Robert D Schnabel,et al.  Copy number variation of individual cattle genomes using next-generation sequencing. , 2012, Genome research.

[19]  M. Ishimoto,et al.  Recent advances in soybean transformation and their application to molecular breeding and genomic analysis , 2012, Breeding science.

[20]  D. Tilman,et al.  Global food demand and the sustainable intensification of agriculture , 2011, Proceedings of the National Academy of Sciences.

[21]  S. Carpenter,et al.  Solutions for a cultivated planet , 2011, Nature.

[22]  Alvaro J. González,et al.  The Medicago Genome Provides Insight into the Evolution of Rhizobial Symbioses , 2011, Nature.

[23]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[24]  N. Friedman,et al.  Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.

[25]  S. Tabata,et al.  A Map-Based Cloning Strategy Employing a Residual Heterozygous Line Reveals that the GIGANTEA Gene Is Involved in Soybean Maturity and Flowering , 2011, Genetics.

[26]  Pär K Ingvarsson,et al.  Association genetics of complex traits in plants. , 2011, The New phytologist.

[27]  J. Schmutz,et al.  Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome , 2010, Proceedings of the National Academy of Sciences.

[28]  Bo Wang,et al.  Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection , 2010, Nature Genetics.

[29]  Qifa Zhang,et al.  Genome-wide association studies of 14 agronomic traits in rice landraces , 2010, Nature Genetics.

[30]  Hongwen Huang,et al.  A single origin and moderate bottleneck during domestication of soybean (Glycine max): implications from microsatellites and nucleotide sequences. , 2010, Annals of botany.

[31]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[32]  H. Hakonarson,et al.  ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data , 2010, Nucleic acids research.

[33]  Baohui Liu,et al.  The Soybean Stem Growth Habit Gene Dt1 Is an Ortholog of Arabidopsis TERMINAL FLOWER11[W][OA] , 2010, Plant Physiology.

[34]  Aaron R. Quinlan,et al.  Bioinformatics Applications Note Genome Analysis Bedtools: a Flexible Suite of Utilities for Comparing Genomic Features , 2022 .

[35]  David Reich,et al.  Population differentiation as a test for selective sweeps. , 2010, Genome research.

[36]  T. Sakurai,et al.  Genome sequence of the palaeopolyploid soybean , 2010, Nature.

[37]  Steven B. Cannon,et al.  SoyBase, the USDA-ARS soybean genetics and genomics database , 2009, Nucleic Acids Res..

[38]  Edgar B Cahoon,et al.  Soybean Oil: Genetic Approaches for Modification of Functionality and Total Content1 , 2009, Plant Physiology.

[39]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[40]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[41]  H. Funatsuki,et al.  Recent Advances in Physiological and Genetic Studies on Chilling Tolerance in Soybean , 2009 .

[42]  Wei Li,et al.  Genetic structure and diversity of cultivated soybean (Glycine max (L.) Merr.) landraces in China , 2008, Theoretical and Applied Genetics.

[43]  M. Purugganan,et al.  The Extent of Linkage Disequilibrium in Rice (Oryza sativa L.) , 2007, Genetics.

[44]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[45]  Baohui Liu,et al.  QTL Mapping of Domestication-related Traits in Soybean (Glycine max) , 2007, Annals of botany.

[46]  L. Vodkin,et al.  A Rearrangement Resulting in Small Tandem Repeats in the F3′5′H Gene of White Flower Genotypes Is Associated with the Soybean W1 Locus , 2007 .

[47]  Randall L. Nelson,et al.  Highly Variable Patterns of Linkage Disequilibrium in Multiple Soybean Populations , 2007, Genetics.

[48]  Bruce D. Smith,et al.  The Molecular Genetics of Crop Domestication , 2006, Cell.

[49]  Randall L. Nelson,et al.  Impacts of genetic bottlenecks on soybean genome diversity , 2006, Proceedings of the National Academy of Sciences.

[50]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[51]  K. Toda,et al.  Structure of flavonoid 3'-hydroxylase gene for pubescence color in soybean , 2005 .

[52]  N. Risch,et al.  Estimation of individual admixture: Analytical and study design considerations , 2005, Genetic epidemiology.

[53]  R. Shoemaker,et al.  Features of a 103-kb gene-rich region in soybean include an inverted perfect repeat cluster of CHS genes comprising the I locus. , 2004, Genome.

[54]  S. Clough,et al.  Tissue-Specific Gene Silencing Mediated by a Naturally Occurring Chalcone Synthase Gene Cluster in Glycine max , 2004, The Plant Cell Online.

[55]  Randall L. Nelson,et al.  Evaluation and Classification of Leaflet Shape and Size in Wild Soybean , 2004 .

[56]  Kyuya Harada,et al.  A single-base deletion in soybean flavonoid 3′-hydroxylase gene is associated with gray pubescence color , 2002, Plant Molecular Biology.

[57]  S. Tanksley,et al.  Seed banks and molecular maps: unlocking genetic potential from the wild. , 1997, Science.

[58]  L. Vodkin,et al.  Duplications That Suppress and Deletions That Restore Expression from a Chalcone Synthase Multigene Family. , 1996, The Plant cell.

[59]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[60]  W. F. Thompson,et al.  Rapid isolation of high molecular weight plant DNA. , 1980, Nucleic acids research.