Comparative genomics and experimental evolution of Escherichia coli BL21(DE3) strains reveal the landscape of toxicity escape from membrane protein overproduction
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[1] S H White,et al. Hydrophobic interactions of peptides with membrane interfaces. , 1998, Biochimica et biophysica acta.
[2] T. Stevens,et al. Do more complex organisms have a greater proportion of membrane proteins in their genomes? , 2000, Proteins.
[3] H. Mori,et al. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. , 2006, DNA research : an international journal for rapid publication of reports on genes and genomes.
[4] K. V. van Wijk,et al. Consequences of Membrane Protein Overexpression in Escherichia coli*S , 2007, Molecular & Cellular Proteomics.
[5] S. Emr,et al. D-ribose metabolism in Escherichia coli K-12: genetics, regulation, and transport , 1984, Journal of bacteriology.
[6] F. Studier,et al. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. , 1986, Journal of molecular biology.
[7] B. Wanner,et al. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[8] Richard E. Lenski,et al. Mechanisms Causing Rapid and Parallel Losses of Ribose Catabolism in Evolving Populations of Escherichia coli B , 2001, Journal of bacteriology.
[9] Haeyoung Jeong,et al. An Optimized Strategy for Genome Assembly of Sanger/pyrosequencing Hybrid Data using Available Software , 2008 .
[10] J. Gowrishankar,et al. IS186 Insertion at a Hot Spot in thelon Promoter as a Basis for Lon Protease Deficiency ofEscherichia coli B: Identification of a Consensus Target Sequence for IS186 Transposition , 2001, Journal of bacteriology.
[11] L. Vuillard,et al. The toxicity of recombinant proteins in Escherichia coli: a comparison of overexpression in BL21(DE3), C41(DE3), and C43(DE3). , 2004, Protein expression and purification.
[12] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.
[13] R. H. Fillingame,et al. Structure of the Membrane Domain of Subunit b of the Escherichia coli F0F1 ATP Synthase* , 1999, The Journal of Biological Chemistry.
[14] F. Neidhardt,et al. lon gene product of Escherichia coli is a heat-shock protein , 1984, Journal of bacteriology.
[15] C Cruz,et al. Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence. , 1994, Journal of molecular biology.
[16] A. Flower,et al. Decreased gene expression from T7 promoters may be due to impaired production of active T7 RNA polymerase , 2005, Microbial cell factories.
[17] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[18] G. Chang,et al. Crystal Structure of the Lactose Operon Repressor and Its Complexes with DNA and Inducer , 1996, Science.
[19] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.
[20] F. Studier,et al. Use of T7 RNA polymerase to direct expression of cloned genes. , 1990, Methods in enzymology.
[21] M. Lewis,et al. Structural analysis of lac repressor bound to allosteric effectors. , 2007, Journal of molecular biology.
[22] R. Hall,et al. Use of GFP fusions for the isolation of Escherichia coli strains for improved production of different target recombinant proteins. , 2011, Journal of biotechnology.
[23] K. Lundstrom,et al. Structural genomics and drug discovery , 2007, Journal of cellular and molecular medicine.
[24] K. Matthews,et al. Arginine 197 of lac repressor contributes significant energy to inducer binding. Confirmation of homology to periplasmic sugar binding proteins. , 1991, The Journal of biological chemistry.
[25] G. Larsson,et al. Suppressing glucose uptake and acetic acid production increases membrane protein overexpression in Escherichia coli , 2011, Microbial cell factories.
[26] B. Miroux,et al. A general approach for heterologous membrane protein expression in Escherichia coli: the uncoupling protein, UCP1, as an example. , 2003, Methods in molecular biology.
[27] K. Jung,et al. First Insights into the Unexplored Two-Component System YehU/YehT in Escherichia coli , 2012, Journal of bacteriology.
[28] D. Drew,et al. Optimizing membrane protein overexpression in the Escherichia coli strain Lemo21(DE3). , 2012, Journal of molecular biology.
[29] K. Altendorf,et al. Structure and function of the F(o) complex of the ATP synthase from Escherichia coli. , 2000, The Journal of experimental biology.
[30] Jeffrey E. Barrick,et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli , 2009, Nature.
[31] Kui Hyeon Kang,et al. Rapid and efficient construction of markerless deletions in the Escherichia coli genome , 2008, Nucleic acids research.
[32] A. Robinson. Production of membrane proteins : strategies for expression and isolation , 2011 .
[33] J. Walker,et al. Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. , 1996, Journal of molecular biology.
[34] H. Bernstein,et al. Physiological Basis for Conservation of the Signal Recognition Particle Targeting Pathway in Escherichia coli , 2001, Journal of bacteriology.
[35] S W Lin,et al. Vectors for selective expression of cloned DNAs by T7 RNA polymerase. , 1987, Gene.
[36] P. Green,et al. Consed: a graphical tool for sequence finishing. , 1998, Genome research.
[37] Improving protein folding efficiency by directed evolution using the GFP folding reporter. , 2003, Methods in molecular biology.
[38] G. Georgiou,et al. Simple Genetic Selection Protocol for Isolation of Overexpressed Genes That Enhance Accumulation of Membrane-Integrated Human G Protein-Coupled Receptors in Escherichia coli , 2010, Applied and Environmental Microbiology.
[39] Samuel Wagner,et al. Tuning Escherichia coli for membrane protein overexpression , 2008, Proceedings of the National Academy of Sciences.
[40] B. Nannenga,et al. Reprogramming chaperone pathways to improve membrane protein expression in Escherichia coli , 2011, Protein science : a publication of the Protein Society.
[41] P. Genevaux,et al. De-convoluting the Genetic Adaptations of E. coli C41(DE3) in Real Time Reveals How Alleviating Protein Production Stress Improves Yields. , 2015, Cell reports.
[42] J. Gowrishankar,et al. IS 186 Insertion at a Hot Spot in the lon Promoter as a Basis for Lon Protease Deficiency of Escherichia coli B: Identification of a Consensus Target Sequence for IS 186 Transposition , 2001 .
[43] G. Georgiou,et al. Genetic analysis of G protein-coupled receptor expression in Escherichia coli: inhibitory role of DnaJ on the membrane integration of the human central cannabinoid receptor. , 2008, Biotechnology and bioengineering.
[44] Inge Jonassen,et al. Systematic exploration of error sources in pyrosequencing flowgram data , 2011, Bioinform..
[45] R. Lenski,et al. Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). , 2009, Journal of molecular biology.
[46] J. Bowie,et al. Genetic selection system for improving recombinant membrane protein expression in E. coli , 2009, Protein science : a publication of the Protein Society.
[47] D. Drew,et al. Optimization of membrane protein overexpression and purification using GFP fusions , 2006, Nature Methods.