Stochastic voyages into uncharted chemical space produce a representative library of all possible drug-like compounds.
暂无分享,去创建一个
P. Wipf | A. Virshup | J. Contreras-Garcı́a | Weitao Yang | D. Beratan | J. Contreras‐García | Aaron Virshup
[1] Johann Gasteiger,et al. A new model for calculating atomic charges in molecules , 1978 .
[2] Kenneth J. Miller,et al. Additions and Corrections - A New Empirical Method to Calculate Average Molecular Polarizabilities , 1979 .
[3] W. Guida,et al. The art and practice of structure‐based drug design: A molecular modeling perspective , 1996, Medicinal research reviews.
[4] Johann Gasteiger,et al. Assessing Similarity and Diversity of Combinatorial Libraries by Spatial Autocorrelation Functions and Neural Networks , 1996 .
[5] G. Bemis,et al. The properties of known drugs. 1. Molecular frameworks. , 1996, Journal of medicinal chemistry.
[6] Andreas Zell,et al. Locating Biologically Active Compounds in Medium-Sized Heterogeneous Datasets by Topological Autocorrelation Vectors: Dopamine and Benzodiazepine Agonists , 1996, J. Chem. Inf. Comput. Sci..
[7] Luhua Lai,et al. A New Atom-Additive Method for Calculating Partition Coefficients , 1997, J. Chem. Inf. Comput. Sci..
[8] Dimitris K. Agrafiotis,et al. Stochastic Algorithms for Maximizing Molecular Diversity , 1997, J. Chem. Inf. Comput. Sci..
[9] H. Matter,et al. Selecting optimally diverse compounds from structure databases: a validation study of two-dimensional and three-dimensional molecular descriptors. , 1997, Journal of medicinal chemistry.
[10] Darren V. S. Green,et al. Selecting Combinatorial Libraries to Optimize Diversity and Physical Properties , 1999, J. Chem. Inf. Comput. Sci..
[11] P. Selzer,et al. Fast calculation of molecular polar surface area as a sum of fragment-based contributions and its application to the prediction of drug transport properties. , 2000, Journal of medicinal chemistry.
[12] Peter Willett,et al. Designing focused libraries using MoSELECT. , 2002, Journal of molecular graphics & modelling.
[13] Philip M. Dean,et al. Molecular diversity in drug design , 2002 .
[14] Valerie J. Gillet,et al. Background Theory of Molecular Diversity , 2002 .
[15] Johann Gasteiger,et al. Handbook of Chemoinformatics , 2003 .
[16] Wolfgang H. B. Sauer,et al. Molecular Shape Diversity of Combinatorial Libraries: A Prerequisite for Broad Bioactivity , 2003, J. Chem. Inf. Comput. Sci..
[17] Johann Gasteiger,et al. The de novo design of median molecules within a property range of interest , 2004, J. Comput. Aided Mol. Des..
[18] Li Liu,et al. Topological Steric Effect Index and Its Application , 2004, J. Chem. Inf. Model..
[19] R. Brereton,et al. Handbook of chemoinformatics: from data to knowledge, edited by Johann Gasteiger, Volumes 1–4. Wiley‐VCH, Weinheim, 2003, ISBN 3527306803, €485 , 2004 .
[20] Derek S. Tan,et al. Diversity-oriented synthesis: exploring the intersections between chemistry and biology , 2005, Nature chemical biology.
[21] Jean-Louis Reymond,et al. Virtual exploration of the small-molecule chemical universe below 160 Daltons. , 2005, Angewandte Chemie.
[22] Weitao Yang,et al. Designing molecules by optimizing potentials. , 2006, Journal of the American Chemical Society.
[23] Nathan Brown,et al. Molecular optimization using computational multi-objective methods. , 2007, Current opinion in drug discovery & development.
[25] J. Reymond,et al. Chemical Space Travel , 2007, ChemMedChem.
[26] Jean-Louis Reymond,et al. Virtual Exploration of the Chemical Universe up to 11 Atoms of C, N, O, F: Assembly of 26.4 Million Structures (110.9 Million Stereoisomers) and Analysis for New Ring Systems, Stereochemistry, Physicochemical Properties, Compound Classes, and Drug Discovery , 2007, J. Chem. Inf. Model..
[27] H. Schaefer,et al. Predicting molecules--more realism, please! , 2008, Angewandte Chemie.
[28] Tudor I. Oprea,et al. Scaffold Topologies. 1. Exhaustive Enumeration up to Eight Rings , 2008, J. Chem. Inf. Model..
[29] D. Bertrand,et al. Discovery of NMDA Glycine Site Inhibitors from the Chemical Universe Database GDB , 2008, ChemMedChem.
[30] Tudor I. Oprea,et al. Scaffold Topologies. 2. Analysis of Chemical Databases , 2008, J. Chem. Inf. Model..
[31] Weitao Yang,et al. Exploring chemical space with discrete, gradient, and hybrid optimization methods. , 2008, The Journal of chemical physics.
[32] Xiangqian Hu,et al. A gradient-directed Monte Carlo approach to molecular design. , 2008, The Journal of chemical physics.
[33] Stuart L. Schreiber,et al. Organic chemistry: Molecular diversity by design , 2009, Nature.
[34] Lorenz C. Blum,et al. Classification of Organic Molecules by Molecular Quantum Numbers , 2009, ChemMedChem.
[35] R. Todeschini,et al. Molecular Descriptors for Chemoinformatics: Volume I: Alphabetical Listing / Volume II: Appendices, References , 2009 .
[36] G. Schneider,et al. Voyages to the (un)known: adaptive design of bioactive compounds. , 2009, Trends in biotechnology.
[37] Lorenz C. Blum,et al. 970 million druglike small molecules for virtual screening in the chemical universe database GDB-13. , 2009, Journal of the American Chemical Society.
[38] R. Rosenfeld. Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.
[39] Peter Ertl,et al. Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions , 2009, J. Cheminformatics.
[40] David J Triggle,et al. The chemist as astronaut: searching for biologically useful space in the chemical universe. , 2009, Biochemical pharmacology.
[41] Roberto Todeschini,et al. Molecular descriptors for chemoinformatics , 2009 .
[42] Lorenz C. Blum,et al. Identification of selective norbornane-type aspartate analogue inhibitors of the glutamate transporter 1 (GLT-1) from the chemical universe generated database (GDB). , 2010, Journal of medicinal chemistry.
[43] Sivaraman Dandapani,et al. Grand challenge commentary: Accessing new chemical space for 'undruggable' targets. , 2010, Nature chemical biology.
[44] Benjamin A. Ellingson,et al. Conformer Generation with OMEGA: Algorithm and Validation Using High Quality Structures from the Protein Databank and Cambridge Structural Database , 2010, J. Chem. Inf. Model..
[45] Warren R. J. D. Galloway,et al. Drug discovery: A question of library design , 2011, Nature.
[46] Aaron B. Beeler,et al. Organic Synthesis Toward Small-Molecule Probes and Drugs Special Feature: Discovery of new antimalarial chemotypes through chemical methodology and library development , 2011 .
[47] Francesco Marchetti,et al. Towards the systematic exploration of chemical space. , 2012, Organic & biomolecular chemistry.
[48] Ryan G. Coleman,et al. ZINC: A Free Tool to Discover Chemistry for Biology , 2012, J. Chem. Inf. Model..
[49] Maria F. Sassano,et al. Automated design of ligands to polypharmacological profiles , 2012, Nature.