Automatic 3D reconstruction of SEM images based on Nano-robotic manipulation and epipolar plane images.

This paper reports a new and general 3D reconstruction algorithm by using the light field reconstruction theory to effectively construct 3D SEM images in a large range. Firstly, a nano-robotic system was employed to automatically capture a group of SEM images along a linear path with a fixed step size, which allowed the 3D SEM images to be reconstructed beyond the field of view (FOV) of SEM. Then, the epipolar-plane images (EPI) were generated, and the depth image was reconstructed based on the specific linear structures emerging in EPI and the automatic depth estimation algorithm. After that, the depth image was stitched and the dense 3D point cloud was obtained by using the delaunay technology. Depth reconstruction with the proposed algorithm does not depend on the matching corresponding points technology. This means nearly all kinds of SEM samples, even those with a simple texture structure or an almost flat surface, can be reconstructed. In addition, the proposed method allows constructing the 3D images out of the FOV of SEM with the assistance of nanorobot. The performance of the proposed algorithm was tested using our self-built database with several microscopic samples. The results demonstrate that the proposed algorithm is general and effective and it is particularly suitable for reconstructing highly complex micro surfaces with a flat surface in a large range.

[1]  Zeyun Yu,et al.  3DSEM++: Adaptive and intelligent 3D SEM surface reconstruction. , 2016, Micron.

[2]  Zeyun Yu,et al.  Recent advances in 3D SEM surface reconstruction. , 2015, Micron.

[3]  Christopher G. Harris,et al.  A Combined Corner and Edge Detector , 1988, Alvey Vision Conference.

[4]  A D Ball,et al.  SEM‐microphotogrammetry, a new take on an old method for generating high‐resolution 3D models from SEM images , 2017, Journal of microscopy.

[5]  Roberto Manduchi,et al.  Bilateral filtering for gray and color images , 1998, Sixth International Conference on Computer Vision (IEEE Cat. No.98CH36271).

[6]  Sounkalo Dembélé,et al.  Stereo-image rectification for dense 3D reconstruction in scanning electron microscope , 2017, 2017 International Conference on Manipulation, Automation and Robotics at Small Scales (MARSS).

[7]  Gebhard Reiss,et al.  3D reconstruction of SEM images by use of optical photogrammetry software. , 2015, Journal of structural biology.

[8]  Zeyun Yu,et al.  Three-dimensional reconstruction of highly complex microscopic samples using scanning electron microscopy and optical flow estimation , 2017, PloS one.

[9]  W. Slówko,et al.  Surface reconstruction with the photometric method in SEM , 2005 .

[10]  K. A. Kryzhanovskii,et al.  3D reconstruction for a scanning electron microscope , 2013, Pattern Recognition and Image Analysis.

[11]  Anath Fischer,et al.  3D Reconstruction and Visualization of Microstructure Surfaces from 2D Images , 2007 .

[12]  Lijun Zhang,et al.  Multidirectional Image Sensing for Microscopy Based on a Rotatable Robot , 2015, Sensors.

[13]  R. D'Souza,et al.  SD-SEM: sparse-dense correspondence for 3D reconstruction of microscopic samples. , 2017, Micron.

[14]  Ahmad Pahlavan Tafti,et al.  3D SEM Surface Reconstruction: An Optimized, Adaptive, and Intelligent Approach , 2016 .

[15]  Eduard Reithmeier,et al.  3D-measurement with the stereo scanning electron microscope on sub-micrometer structures , 2010 .

[16]  Robert J. Woodham,et al.  Photometric method for determining surface orientation from multiple images , 1980 .

[17]  Anny Yuniarti 3D Surface Reconstruction of Noisy Photometric Stereo , 2007 .

[18]  Yael Pritch,et al.  Scene reconstruction from high spatio-angular resolution light fields , 2013, ACM Trans. Graph..

[19]  Jean-Philippe Thiran,et al.  Surface Reconstruction From Microscopic Images in Optical Lithography , 2014, IEEE Transactions on Image Processing.

[20]  L. De Chiffre,et al.  Uncertainty evaluation for three-dimensional scanning electron microscope reconstructions based on the stereo-pair technique , 2011 .