Rad51p and Rad54p, but not Rad52p, elevate gene repair in Saccharomyces cerevisiae directed by modified single-stranded oligonucleotide vectors

Synthetic single-stranded DNA vectors have been used to correct point and frameshift mutations in episomal or chromosomal targets in the yeast Saccharomyces cerevisiae. Certain parameters, such as the length of the vector and the genetic background of the organism, have a significant impact on the process of targeted gene repair, and point mutations are corrected at a higher frequency than frameshift mutations. Genetic analyses reveal that expression levels of the recombination/repair genes RAD51, RAD52 and RAD54 can affect the frequency of gene repair. Overexpression of RAD51 enhances the frequency 4-fold for correction of an episomal target and 5-fold for correction of a chromosomal target; overexpression of RAD54 is also effective in stimulating gene repair, to the same extent as RAD51 in the chromosomal target. In sharp contrast, RAD52 gene expression serves to reduce gene repair activity in rescue experiments and in experiments where RAD52 is overexpressed in a wild-type strain. This may suggest an antagonist role for Rad52p. Consistent with this notion, the highest level of targeted repair occurs when the RAD51 gene is overexpressed in a strain of yeast deficient in RAD52 gene function.

[1]  J. S. Owen,et al.  Gene Correction of the Apolipoprotein (Apo) E2 Phenotype to Wild-type ApoE3 by in Situ Chimeraplasty* , 2001, The Journal of Biological Chemistry.

[2]  T. Rando,et al.  Rescue of dystrophin expression in mdx mouse muscle by RNA/DNA oligonucleotides. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[3]  L. Lai,et al.  Homologous Recombination Based Gene Therapy , 1999, Nephron Experimental Nephrology.

[4]  C. Steer,et al.  Targeted nucleotide exchange in the alkaline phosphatase gene of HuH‐7 cells mediated by a chimeric RNA/DNA oligonucleotide , 1997, Hepatology.

[5]  P. Sung Yeast Rad55 and Rad57 proteins form a heterodimer that functions with replication protein A to promote DNA strand exchange by Rad51 recombinase. , 1997, Genes & development.

[6]  V. Alexeev,et al.  Stable and inheritable changes in genotype and phenotype of albino melanocytes induced by an RNA-DNA oligonucleotide , 1998, Nature Biotechnology.

[7]  S. Oliver,et al.  Heritable Damage to Yeast Caused by Transformation , 1991, Bio/Technology.

[8]  C. Steer,et al.  Nucleotide Exchange in Genomic DNA of Rat Hepatocytes Using RNA/DNA Oligonucleotides , 1999, The Journal of Biological Chemistry.

[9]  E. Kmiec,et al.  Targeted gene correction of episomal DNA in mammalian cells mediated by a chimeric RNA.DNA oligonucleotide. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[10]  C. Bendixen,et al.  DNA strand annealing is promoted by the yeast Rad52 protein. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[11]  M. Rice,et al.  Correction of the Mutation Responsible for Sickle Cell Anemia by an RNA-DNA Oligonucleotide , 1996, Science.

[12]  D. J. Peterson,et al.  Targeted manipulation of maize genes in vivo using chimeric RNA/DNA oligonucleotides. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[13]  R. Rothstein,et al.  Rad52 forms DNA repair and recombination centers during S phase , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[14]  D. J. Peterson,et al.  Engineering herbicide-resistant maize using chimeric RNA/DNA oligonucleotides , 2000, Nature Biotechnology.

[15]  P. Sung,et al.  Superhelicity-driven homologous DNA pairing by yeast recombination factors Rad51 and Rad54. , 2000, Molecular cell.

[16]  G. May,et al.  A tool for functional plant genomics: chimeric RNA/DNA oligonucleotides cause in vivo gene-specific mutations. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[17]  M. Rice,et al.  In vitro and in vivo nucleotide exchange directed by chimeric RNA/DNA oligonucleotides in Saccharomyces cerevisae , 2001, Molecular microbiology.

[18]  C. Steer,et al.  In vivo site-directed mutagenesis of the factor IX gene by chimeric RNA/DNA oligonucleotides , 1998, Nature Medicine.

[19]  G. Cotsarelis,et al.  Localized in vivo genotypic and phenotypic correction of the albino mutation in skin by RNA-DNA oligonucleotide , 2000, Nature Biotechnology.

[20]  C. Steer,et al.  Correction of the UDP-glucuronosyltransferase gene defect in the gunn rat model of crigler-najjar syndrome type I with a chimeric oligonucleotide. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[21]  M. Rice,et al.  The DNA strand of chimeric RNA/DNA oligonucleotides can direct gene repair/conversion activity in mammalian and plant cell-free extracts. , 2000, Nucleic acids research.

[22]  P. Sung,et al.  Catalysis of homologous DNA pairing by yeast Rad51 and Rad54 proteins , 1998, Nature.

[23]  J. Damborský,et al.  Molecular Dissection of Interactions between Rad51 and Members of the Recombination-Repair Group , 2001, Molecular and Cellular Biology.

[24]  E. Kmiec,et al.  Targeted gene repair , 1999, Gene Therapy.

[25]  D. P. Liu,et al.  Targeted correction of the point mutations of beta-thalassemia and targeted mutagenesis of the nucleotide associated with HPFH by RNA/DNA oligonucleotides: potential for beta-thalassemia gene therapy. , 2001, Blood cells, molecules & diseases.

[26]  J A Eisen,et al.  Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. , 1995, Nucleic acids research.

[27]  W. T. Bartlett,et al.  In vivo targeted repair of a point mutation in the canine dystrophin gene by a chimeric RNA/DNA oligonucleotide , 2000, Nature Biotechnology.

[28]  F. Sherman,et al.  Strand-specificity in the transformation of yeast with synthetic oligonucleotides. , 1992, Genetics.

[29]  Tetsurou Yamamoto,et al.  Parameters affecting the frequencies of transformation and co‐transfromation with synthetic oligonucleotides in yeast , 1992, Yeast.

[30]  M. Rice,et al.  In vivo gene repair of point and frameshift mutations directed by chimeric RNA/DNA oligonucleotides and modified single-stranded oligonucleotides. , 2001, Nucleic acids research.

[31]  B. Kren,et al.  Enhanced gene transfer into HuH-7 cells and primary rat hepatocytes using targeted liposomes and polyethylenimine. , 1998, BioTechniques.

[32]  F. Sherman,et al.  Transformation of yeast with synthetic oligonucleotides. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[33]  W. Heyer,et al.  Rad54 protein is targeted to pairing loci by the Rad51 nucleoprotein filament. , 2000, Molecular cell.

[34]  O. Igoucheva,et al.  Targeted gene correction by small single-stranded oligonucleotides in mammalian cells , 2001, Gene Therapy.

[35]  E. Kmiec,et al.  Evidence for a four-strand exchange catalyzed by the RecA protein. , 2000, Biochemistry.

[36]  M. Rice,et al.  The potential of nucleic acid repair in functional genomics , 2001, Nature Biotechnology.

[37]  R. Kumar,et al.  A plausible mechanism for gene correction by chimeric oligonucleotides. , 2000, Biochemistry.