Nitrogen assimilation system in maize is regulated by developmental and tissue-specific mechanisms

[1]  S. Rothstein,et al.  Erratum to ‘Structure and regulation of ferredoxin‐dependent glutamase synthase from Arabidopsis thaliana’ , 1997, The FEBS journal.

[2]  M. Tester,et al.  Maize maintains growth in response to decreased nitrate supply through a highly dynamic and developmental stage-specific transcriptional response. , 2016, Plant biotechnology journal.

[3]  R. Pinton,et al.  Transcriptomic analysis highlights reciprocal interactions of urea and nitrate for nitrogen acquisition by maize roots. , 2015, Plant & cell physiology.

[4]  Anne Osbourn,et al.  Regulation of metabolic gene clusters in Arabidopsis thaliana , 2014, The New phytologist.

[5]  Felipe F. Aceituno,et al.  Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots. , 2014, The Plant journal : for cell and molecular biology.

[6]  Rafael A. Cañas,et al.  Nitrogen-use efficiency in maize (Zea mays L.): from 'omics' studies to metabolic modelling. , 2014, Journal of experimental botany.

[7]  Atsushi Fukushima,et al.  A network perspective on nitrogen metabolism from model to crop plants using integrated 'omics' approaches. , 2014, Journal of experimental botany.

[8]  Rafael A. Cañas,et al.  Plastidic aspartate aminotransferases and the biosynthesis of essential amino acids in plants. , 2014, Journal of experimental botany.

[9]  M. Kusano,et al.  Evidence supporting distinct functions of three cytosolic glutamine synthetases and two NADH-glutamate synthases in rice. , 2014, Journal of experimental botany.

[10]  C. Masclaux-Daubresse,et al.  Autophagy, plant senescence, and nutrient recycling. , 2014, Journal of experimental botany.

[11]  L. Daviet,et al.  The rise of operon-like gene clusters in plants. , 2014, Trends in plant science.

[12]  K. Shirasu,et al.  Stitching together the Multiple Dimensions of Autophagy Using Metabolomics and Transcriptomics Reveals Impacts on Metabolism, Development, and Plant Responses to the Environment in Arabidopsis[C][W] , 2014, Plant Cell.

[13]  T. Bisseling,et al.  Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport , 2014, Proceedings of the National Academy of Sciences.

[14]  A. Weber,et al.  Three distinct biochemical subtypes of C4 photosynthesis? A modelling analysis , 2014, Journal of experimental botany.

[15]  S. Gidda,et al.  AMT1;1 transgenic rice plants with enhanced NH4 + permeability show superior growth and higher yield under optimal and suboptimal NH4 + conditions , 2014, Journal of experimental botany.

[16]  David M. Chiassona,et al.  Soybean SAT 1 ( Symbiotic Ammonium Transporter 1 ) encodes a bHLH transcription factor involved in nodule growth and NH 4 + transport , 2014 .

[17]  G. Coruzzi,et al.  A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. , 2014, Trends in plant science.

[18]  C. Ávila,et al.  Deciphering the Role of Aspartate and Prephenate Aminotransferase Activities in Plastid Nitrogen Metabolism1[C][W][OPEN] , 2013, Plant Physiology.

[19]  J. Stelling,et al.  Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis , 2013, Molecular systems biology.

[20]  Mathieu Sebilo,et al.  Long-term fate of nitrate fertilizer in agricultural soils , 2013, Proceedings of the National Academy of Sciences.

[21]  C. Messina,et al.  N distribution in maize plant as a marker for grain yield and limits on its remobilization after flowering , 2013 .

[22]  L. Lukens,et al.  Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs , 2013, Plant signaling & behavior.

[23]  U. Roessner,et al.  The response of the maize nitrate transport system to nitrogen demand and supply across the lifecycle. , 2013, The New phytologist.

[24]  M. Stitt.  Progress in understanding and engineering primary plant metabolism. , 2013, Current opinion in biotechnology.

[25]  C. Masclaux-Daubresse,et al.  Arabidopsis thaliana ASN2 encoding asparagine synthetase is involved in the control of nitrogen assimilation and export during vegetative growth. , 2013, Plant, cell & environment.

[26]  A. Good,et al.  Engineering nitrogen use efficient crop plants: the current status. , 2012, Plant biotechnology journal.

[27]  U. Sauer,et al.  Regulation of yeast central metabolism by enzyme phosphorylation , 2012, Molecular systems biology.

[28]  U. Sonnewald,et al.  Maize Source Leaf Adaptation to Nitrogen Deficiency Affects Not Only Nitrogen and Carbon Metabolism But Also Control of Phosphate Homeostasis1[W][OA] , 2012, Plant Physiology.

[29]  Michel Zivy,et al.  The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize. , 2012, Journal of experimental botany.

[30]  Y. Tsay,et al.  Uptake, allocation and signaling of nitrate. , 2012, Trends in plant science.

[31]  R. Gutiérrez.  Systems Biology for Enhanced Plant Nitrogen Nutrition , 2012, Science.

[32]  Guohua Xu,et al.  Plant nitrogen assimilation and use efficiency. , 2012, Annual review of plant biology.

[33]  M. Stitt,et al.  On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions Scientific Correspondence , 2012, Plant Physiology.

[34]  Uwe Scholz,et al.  Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C4 Model and Provides Candidates for Regulation[W][OA] , 2011, Plant Cell.

[35]  Jairus Bowne,et al.  Comprehensive profiling and quantitation of amine group containing metabolites. , 2011, Analytical chemistry.

[36]  F. Daniel-Vedele,et al.  Arabidopsis Roots and Shoots Show Distinct Temporal Adaptation Patterns toward Nitrogen Starvation1[W] , 2011, Plant Physiology.

[37]  E. Ober,et al.  Drought and implications for nutrition , 2011 .

[38]  M. Hawkesford.  An Overview of Nutrient Use Efficiency and Strategies for Crop Improvement , 2011 .

[39]  P. Barraclough,et al.  The Molecular and Physiological Basis of Nutrient Use Efficiency in Crops , 2011 .

[40]  M. Saqi,et al.  New perspectives on glutamine synthetase in grasses. , 2011, Journal of experimental botany.

[41]  B. Palsson,et al.  Deciphering the transcriptional regulatory logic of amino acid metabolism. , 2011, Nature chemical biology.

[42]  Yann LeCun,et al.  Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate , 2010, Genome Biology.

[43]  M. Tester,et al.  Dichotomy in the NRT Gene Families of Dicots and Grass Species , 2010, PloS one.

[44]  Dallas E. Kroon,et al.  Fine Quantitative Trait Loci Mapping of Carbon and Nitrogen Metabolism Enzyme Activities and Seedling Biomass in the Maize IBM Mapping Population1[W][OA] , 2010, Plant Physiology.

[45]  S. Rothstein,et al.  Biological functions of asparagine synthetase in plants , 2010 .

[46]  Thomas Altmann,et al.  Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions[C][W][OA] , 2010, Plant Cell.

[47]  G. Krouk,et al.  Nitrate signaling: adaptation to fluctuating environments. , 2010, Current opinion in plant biology.

[48]  Zhou Du,et al.  agriGO: a GO analysis toolkit for the agricultural community , 2010, Nucleic Acids Res..

[49]  T. Garnett,et al.  Root based approaches to improving nitrogen use efficiency in plants. , 2009, Plant, cell & environment.

[50]  T. Zhu,et al.  Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase. , 2009, Plant biotechnology journal.

[51]  Roger Sylvester-Bradley,et al.  Analysing nitrogen responses of cereals to prioritize routes to the improvement of nitrogen use efficiency. , 2009, Journal of experimental botany.

[52]  A. Good,et al.  Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression of alanine aminotransferase. , 2008, Plant biotechnology journal.

[53]  T. Yoneyama,et al.  Implication of the glutamine synthetase/glutamate synthase pathway in conditioning the amino acid metabolism in bundle sheath and mesophyll cells of maize leaves , 2008, The FEBS journal.

[54]  J. Araus,et al.  Gene expression, cellular localisation and function of glutamine synthetase isozymes in wheat (Triticum aestivum L.) , 2008, Plant Molecular Biology.

[55]  D. Wells,et al.  Nitrate transport and signalling. , 2007, Journal of experimental botany.

[56]  K. Edwards,et al.  Two Cytosolic Glutamine Synthetase Isoforms of Maize Are Specifically Involved in the Control of Grain Production[W][OA] , 2006, The Plant Cell Online.

[57]  C. Meyer,et al.  Post-translational regulation of nitrate reductase strongly affects the levels of free amino acids and nitrate, whereas transcriptional regulation has only minor influence , 2006 .

[58]  Rafael A. Irizarry,et al.  Bioinformatics and Computational Biology Solutions using R and Bioconductor , 2005 .

[59]  Gordon K. Smyth,et al.  limma: Linear Models for Microarray Data , 2005 .

[60]  W. Frommer.  Faculty Opinions recommendation of A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. , 2004 .

[61]  Joachim Selbig,et al.  A Robot-Based Platform to Measure Multiple Enzyme Activities in Arabidopsis Using a Set of Cycling Assays: Comparison of Changes of Enzyme Activities and Transcript Levels during Diurnal Cycles and in Prolonged Darknessw⃞ , 2004, The Plant Cell Online.

[62]  A. Good,et al.  Can less yield more? Is reducing nutrient input into the environment compatible with maintaining crop production? , 2004, Trends in plant science.

[63]  Gloria Coruzzi,et al.  Genomic Analysis of the Nitrate Response Using a Nitrate Reductase-Null Mutant of Arabidopsis1[w] , 2004, Plant Physiology.

[64]  K. Lindsey,et al.  Can genetic manipulation of plant nitrogen assimilation enzymes result in increased crop yield and greater N-use efficiency? An assessment , 2004 .

[65]  A. Sherman,et al.  The Nir1 locus in barley is tightly linked to the nitrite reductase apoprotein gene Nii , 1995, Molecular and General Genetics MGG.

[66]  E. Takahashi,et al.  Changes in the activities of ferredoxin- and NADH-glutamate synthase during seedling development of peas , 1982, Planta.

[67]  C. Foyer,et al.  Short-term effects of nitrate, nitrite and ammonium assimilation on photosynthesis, carbon partitioning and protein phosphorylation in maize , 2004, Planta.

[68]  John Quackenbush,et al.  Genesis: cluster analysis of microarray data , 2002, Bioinform..

[69]  H. Morikawa,et al.  Nitrite reductase gene enrichment improves assimilation of NO(2) in Arabidopsis. , 2001, Plant physiology.

[70]  S. Brunak,et al.  Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. , 2000, Journal of molecular biology.

[71]  W. Frommer,et al.  The molecular physiology of ammonium uptake and retrieval. , 2000, Current opinion in plant biology.

[72]  G. Coruzzi,et al.  THE MOLECULAR-GENETICS OF NITROGEN ASSIMILATION INTO AMINO ACIDS IN HIGHER PLANTS. , 1996, Annual review of plant physiology and plant molecular biology.

[73]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[74]  Jeffrey D Wolt.  Soil Solution Chemistry: Applications to Environmental Science and Agriculture , 1994 .

[75]  X. Z. Li,et al.  Induction and Turnover of Nitrate Reductase in Zea mays (Influence of Light) , 1993, Plant physiology.

[76]  X. Z. Li,et al.  Induction and Turnover of Nitrate Reductase in Zea mays (Influence of NO3-) , 1993, Plant physiology.

[77]  S. Cohen,et al.  Synthesis of a fluorescent derivatizing reagent, 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate, and its application for the analysis of hydrolysate amino acids via high-performance liquid chromatography. , 1993, Analytical biochemistry.

[78]  K. Joy,et al.  17 - Enzymes of Asparagine Metabolism , 1990 .

[79]  L. P. Solomonson,et al.  ASSIMILATORY NITRATE REDUCTASE: FUNCTIONAL PROPERTIES AND REGULATION , 1990 .

[80]  K. Dhugga,et al.  Analysis of Nitrogen Accumulation and Use in Bread and Durum Wheat , 1989 .

[81]  R. Hageman,et al.  Nitrate and Nitrite Reduction , 1980 .