Simulating One-Photon Absorption and Resonance Raman Scattering Spectra Using Analytical Excited State Energy Gradients within Time-Dependent Density Functional Theory.
暂无分享,去创建一个
Niranjan Govind | Lasse Jensen | N. Govind | H. V. van Dam | D. Silverstein | L. Jensen | Daniel W. Silverstein | Hubertus J. J. van Dam | Daniel W. Silverstein
[1] Benjamin T. Miller,et al. A parallel implementation of the analytic nuclear gradient for time-dependent density functional theory within the Tamm–Dancoff approximation , 1999 .
[2] R. Mathies,et al. Resonance Raman cross-sections and vibronic analysis of rhodamine 6G from broadband stimulated Raman spectroscopy. , 2008, Chemphyschem : a European journal of chemical physics and physical chemistry.
[3] James M. Dixon,et al. PhotochemCAD 2: A Refined Program with Accompanying Spectral Databases for Photochemical Calculations¶ , 2005, Photochemistry and photobiology.
[4] J. Verhoeven,et al. Resonance Raman intensity analysis of a dicyanovinyl-azaadamantane: Mode-specific reorganization energies for charge-transfer and locally-excited states , 1998 .
[5] M. Gordon,et al. Implementation of the analytic energy gradient for the combined time-dependent density functional theory/effective fragment potential method: application to excited-state molecular dynamics simulations. , 2011, The Journal of chemical physics.
[6] Niranjan Govind,et al. Modeling Fast Electron Dynamics with Real-Time Time-Dependent Density Functional Theory: Application to Small Molecules and Chromophores. , 2011, Journal of chemical theory and computation.
[7] Caitlin C. Bannan,et al. Simulating Ru L3-edge X-ray absorption spectroscopy with time-dependent density functional theory: model complexes and electron localization in mixed-valence metal dimers. , 2013, The journal of physical chemistry. A.
[8] M. E. Casida,et al. Progress in time-dependent density-functional theory. , 2011, Annual review of physical chemistry.
[9] Jie Liu,et al. Molecular-orbital-free algorithm for the excited-state force in time-dependent density functional theory. , 2011, The Journal of chemical physics.
[10] Frank Neese,et al. Analysis and prediction of absorption band shapes, fluorescence band shapes, resonance Raman intensities, and excitation profiles using the time-dependent theory of electronic spectroscopy. , 2007, The Journal of chemical physics.
[11] E. Gross,et al. Time-dependent density functional theory. , 2004, Annual review of physical chemistry.
[12] J. O. Jeppesen,et al. Determination of binding strengths of a host-guest complex using resonance Raman scattering. , 2009, The journal of physical chemistry. A.
[13] D. Silverstein,et al. Assessment of the accuracy of long-range corrected functionals for describing the electronic and optical properties of silver clusters. , 2010, The Journal of chemical physics.
[14] Jacopo Tomasi,et al. Geometries and properties of excited states in the gas phase and in solution: theory and application of a time-dependent density functional theory polarizable continuum model. , 2006, The Journal of chemical physics.
[15] E. Heller. Time dependent variational approach to semiclassical dynamics , 1976 .
[16] Frank Neese,et al. Description of the ground-state covalencies of the bis(dithiolato) transition-metal complexes from X-ray absorption spectroscopy and time-dependent density-functional calculations. , 2007, Chemistry.
[17] Curvature and Frontier Orbital Energies in Density Functional Theory. , 2012, The journal of physical chemistry letters.
[18] S. Tretiak,et al. Prediction of Two-Photon Absorption Properties for Organic Chromophores Using Time-Dependent Density-Functional Theory , 2004 .
[19] Nicholas A Besley,et al. Time-dependent density functional theory calculations of the spectroscopy of core electrons. , 2010, Physical chemistry chemical physics : PCCP.
[20] Zijian Guo,et al. A charge transfer type pH responsive fluorescent probe and its intracellular application , 2010 .
[21] Niranjan Govind,et al. Excited states of DNA base pairs using long-range corrected time-dependent density functional theory. , 2009, The journal of physical chemistry. A.
[22] Stefan Grimme,et al. Density functional calculations of the vibronic structure of electronic absorption spectra. , 2004, The Journal of chemical physics.
[23] G. Smulevich,et al. Resonance Raman spectrum of crystal violet , 1979 .
[24] T. Van Voorhis,et al. Excitation energies and Stokes shifts from a restricted open-shell Kohn-Sham approach. , 2013, The Journal of chemical physics.
[25] Benjamin T. Miller,et al. A parallel implementation of the analytic nuclear gradient for time-dependent density functional theory within the Tamm–Dancoff approximation , 2010 .
[26] G. Haucke,et al. Thermal Isomerization of Indigo , 1995 .
[27] Roger D. Amos,et al. Geometric derivatives of excitation energies using SCF and DFT , 1999 .
[28] Gil,et al. Electronic states of the phenoxyl radical , 2001 .
[29] N. Handy,et al. Study of excited states of furan and pyrrole by time-dependent density functional theory , 2002 .
[30] T. Spiro,et al. Mode recognition in UV resonance Raman spectra of imidazole: histidine monitoring in proteins. , 2012, The journal of physical chemistry. B.
[31] L. González,et al. An Assessment of RASSCF and TDDFT Energies and Gradients on an Organic Donor-Acceptor Dye Assisted by Resonance Raman Spectroscopy. , 2013, Journal of chemical theory and computation.
[32] J. E. Katon,et al. VIBRATIONAL SPECTRA AND STRUCTURE OF CHLOROACETIC ACID. , 1974 .
[33] John M Herbert,et al. Both intra- and interstrand charge-transfer excited states in aqueous B-DNA are present at energies comparable to, or just above, the (1)pipi* excitonic bright states. , 2009, Journal of the American Chemical Society.
[34] D. Silverstein,et al. Surface-Enhanced Hyper-Raman Scattering Elucidates the Two-Photon Absorption Spectrum of Rhodamine 6G , 2013 .
[35] R. Baer,et al. Performance of DFT Methods in the Calculation of Optical Spectra of Chromophores , 2008, 2008 DoD HPCMP Users Group Conference.
[36] I. Gould,et al. Mode-specific vibrational reorganization energies accompanying photoinduced electron transfer in the hexamethylbenzene/tetracyanoethylene charge-transfer complex , 1992 .
[37] J. Hutter,et al. Excited state geometries within time-dependent and restricted open-shell density functional theories , 2003 .
[38] R. H. Schuler,et al. The resonance Raman spectrum of phenoxyl radical , 1984 .
[39] G. Tripathi,et al. The time-resolved resonance raman spectrum of pulse radiolytically produced phenoxyl radical , 1983 .
[40] L. Jensen,et al. Probing one-photon inaccessible electronic states with high sensitivity: wavelength scanned surface enhanced hyper-Raman scattering. , 2011, Chemphyschem : a European journal of chemical physics and physical chemistry.
[41] Richard Williams,et al. Fluorescence of Naphthacene Vapor , 1963 .
[42] James R. Chelikowsky,et al. Excited-state forces within time-dependent density-functional theory: A frequency-domain approach , 2007 .
[43] F. Neese,et al. Efficient and automatic calculation of optical band shapes and resonance Raman spectra for larger molecules within the independent mode displaced harmonic oscillator model. , 2012, The Journal of chemical physics.
[44] E. Heller. The semiclassical way to molecular spectroscopy , 1981 .
[45] J. O. Jeppesen,et al. Chloride anion controlled molecular "switching". Binding of 2,5,7-trinitro-9-dicyanomethylenefluorene-C60 by tetrathiafulvalene calix[4]pyrrole and photophysical generation of two different charge-separated states. , 2008, Journal of the American Chemical Society.
[46] H. Ågren,et al. Hydrogen Bonding to Tyrosyl Radical Analyzed by Ab Initio g-Tensor Calculations , 2000 .
[47] Excited-state forces within a first-principles Green's function formalism. , 2002, Physical review letters.
[48] Stefan Grimme,et al. Semiempirical GGA‐type density functional constructed with a long‐range dispersion correction , 2006, J. Comput. Chem..
[49] H. Tam,et al. Two-photon induced luminescence, singlet oxygen generation, cellular uptake and photocytotoxic properties of amphiphilic Ru(II) polypyridyl-porphyrin conjugates as potential bifunctional photodynamic therapeutic agents. , 2011, Organic & biomolecular chemistry.
[50] E. Heller,et al. Polyatomic Raman scattering for general harmonic potentials , 1982 .
[51] P. Glaude,et al. Low temperature oxidation of benzene and toluene in mixture with n-decane. , 2013, Proceedings of the Combustion Institute. International Symposium on Combustion.
[52] Sriram Krishnamoorthy,et al. Active-space completely-renormalized equation-of-motion coupled-cluster formalism: Excited-state studies of green fluorescent protein, free-base porphyrin, and oligoporphyrin dimer. , 2010, The Journal of chemical physics.
[53] Anna I. Krylov,et al. Non-Condon Effects in the One- and Two-Photon Absorption Spectra of the Green Fluorescent Protein , 2011 .
[54] Sriram Krishnamoorthy,et al. EOMCC, MRPT, and TDDFT studies of charge transfer processes in mixed-valence compounds: application to the spiro molecule. , 2010, The journal of physical chemistry. A.
[55] Michael J Frisch,et al. Energy-Specific Linear Response TDHF/TDDFT for Calculating High-Energy Excited States. , 2011, Journal of chemical theory and computation.
[56] E. Heller,et al. Simple aspects of Raman scattering , 1982 .
[57] Sylvio Canuto,et al. The role of molecular conformation and polarizable embedding for one- and two-photon absorption of disperse orange 3 in solution. , 2012, The journal of physical chemistry. B.
[58] C. Adamo,et al. TD-DFT Assessment of Functionals for Optical 0-0 Transitions in Solvated Dyes. , 2012, Journal of chemical theory and computation.
[59] R. Amos. Dipole moments in excited state DFT calculations , 2002 .
[60] W. Edwards,et al. Symmetry-breaking solvent effects on the electronic structure and spectra of a series of triphenylmethane dyes , 1992 .
[61] G. Mazur,et al. Time-dependent density functional theory gradients in the Amsterdam density functional package: geometry optimizations of spin-flip excitations , 2011 .
[62] Jie Liu,et al. Time-Dependent Approach to Resonance Raman Spectra Including Duschinsky Rotation and Herzberg-Teller Effects: Formalism and Its Realistic Applications. , 2012, Journal of chemical theory and computation.
[63] C. Aikens,et al. Effects of core distances, solvent, ligand, and level of theory on the TDDFT optical absorption spectrum of the thiolate-protected Au(25) nanoparticle. , 2009, The journal of physical chemistry. A.
[64] V. Barone,et al. Singlet excited-state behavior of uracil and thymine in aqueous solution: a combined experimental and computational study of 11 uracil derivatives. , 2006, Journal of the American Chemical Society.
[65] L. Jensen,et al. Calculation of Absolute Resonance Raman Intensities: Vibronic Theory vs Short-Time Approximation† , 2010 .
[66] M. Head‐Gordon,et al. Failure of time-dependent density functional theory for long-range charge-transfer excited states: the zincbacteriochlorin-bacteriochlorin and bacteriochlorophyll-spheroidene complexes. , 2004, Journal of the American Chemical Society.
[67] Tjerk P. Straatsma,et al. NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations , 2010, Comput. Phys. Commun..
[68] Kimihiko Hirao,et al. Excited state geometry optimizations by analytical energy gradient of long-range corrected time-dependent density functional theory. , 2006, The Journal of chemical physics.
[69] G. Scuseria,et al. An efficient implementation of time-dependent density-functional theory for the calculation of excitation energies of large molecules , 1998 .
[70] D. Silverstein,et al. Understanding the Resonance Raman Scattering of Donor-Acceptor Complexes using Long-Range Corrected DFT. , 2010, Journal of chemical theory and computation.
[71] G. Scuseria,et al. A systematic theoretical study of harmonic vibrational frequencies: The single and double excitation coupled cluster (CCSD) method , 1988 .
[72] F. Neese,et al. Efficient time-dependent density functional theory approximations for hybrid density functionals: analytical gradients and parallelization. , 2011, The Journal of chemical physics.
[73] Filipp Furche,et al. Adiabatic time-dependent density functional methods for excited state properties , 2002 .
[74] Nikos L Doltsinis,et al. Plane wave/pseudopotential implementation of excited state gradients in density functional linear response theory: a new route via implicit differentiation. , 2005, The Journal of chemical physics.
[75] Paweł Sałek,et al. Density-functional theory of linear and nonlinear time-dependent molecular properties , 2002 .
[76] N. Ernsting,et al. The electronic origin of the ππ* absorption of amino coumarins studied in a supersonically cooled free jet , 1982 .
[77] E. Gross,et al. Density-Functional Theory for Time-Dependent Systems , 1984 .
[78] A. Kelley,et al. Resonance Raman Intensity Analysis of the Carbazole/Tetracyanoethylene Charge-Transfer Complex: Mode-Specific Reorganization Energies for a Hole-Transport Molecule† , 2000 .
[79] I. Polyak,et al. The phenoxyl radical-water complex--a matrix isolation and computational study. , 2012, Journal of the American Chemical Society.
[80] Donald G Truhlar,et al. Computational Thermochemistry: Scale Factor Databases and Scale Factors for Vibrational Frequencies Obtained from Electronic Model Chemistries. , 2010, Journal of chemical theory and computation.
[81] Dmitrij Rappoport,et al. Analytical time-dependent density functional derivative methods within the RI-J approximation, an approach to excited states of large molecules. , 2005, The Journal of chemical physics.
[82] Roberto Improta,et al. Insights for an Accurate Comparison of Computational Data to Experimental Absorption and Emission Spectra: Beyond the Vertical Transition Approximation. , 2013, Journal of chemical theory and computation.
[83] Hui Li,et al. Analytic energy gradient in combined time-dependent density functional theory and polarizable force field calculation. , 2010, The Journal of chemical physics.
[84] A. Grichine,et al. Long-lived two-photon excited luminescence of water-soluble europium complex: applications in biological imaging using two-photon scanning microscopy. , 2008, Journal of the American Chemical Society.
[85] Marat Valiev,et al. Excitation energies of zinc porphyrin in aqueous solution using long-range corrected time-dependent density functional theory. , 2009, The journal of physical chemistry. A.
[86] R. Bartlett,et al. Harmonic vibrational frequencies and infrared intensities from analytic fourth‐order many‐body perturbation theory gradients , 1991 .
[87] George C Schatz,et al. Resonance Raman scattering of rhodamine 6G as calculated using time-dependent density functional theory. , 2006, The journal of physical chemistry. A.
[88] D. Silverstein,et al. Probing two-photon properties of molecules: large non-Condon effects dominate the resonance hyper-Raman scattering of rhodamine 6G. , 2011, Journal of the American Chemical Society.
[89] F. Neese,et al. Optical absorption and emission properties of rubrene: insight from a combined experimental and theoretical study , 2009 .
[90] Lasse Jensen,et al. Theoretical studies of plasmonics using electronic structure methods. , 2011, Chemical reviews.
[91] J. Kennis,et al. Identification of a mechanism of photoprotective energy dissipation in higher plants , 2007, Nature.
[92] R. Ball,et al. Photosynthetic water oxidation: the role of tyrosine radicals. , 2004, Biochimica et biophysica acta.
[93] B. Champagne,et al. Resonance Raman spectra and Raman excitation profiles of rhodamine 6G from time-dependent density functional theory. , 2008, Chemphyschem : a European journal of chemical physics and physical chemistry.
[94] Carole Van Caillie,et al. Geometric derivatives of density functional theory excitation energies using gradient-corrected functionals , 2000 .
[95] J. Neugebauer,et al. Resonance Raman spectra of uracil based on Kramers-Kronig relations using time-dependent density functional calculations and multireference perturbation theory. , 2004, The Journal of chemical physics.
[96] V. Subramaniam,et al. Three photoconvertible forms of green fluorescent protein identified by spectral hole-burning , 1999, Nature Structural Biology.
[97] P. N. Day,et al. Analytical energy gradients of Coulomb‐attenuated time‐dependent density functional methods for excited states , 2010 .
[98] N. Govind,et al. Linear-Response and Real-Time Time-Dependent Density Functional Theory Studies of Core-Level Near-Edge X-Ray Absorption. , 2012, Journal of chemical theory and computation.
[99] O. Poizat,et al. Infrared, Raman and resonance Raman studies of the Ru(2,2'-bipyridine)32+ cation in its chloride crystal and as an intercalate in the layered manganese phosphide sulfide (MnPS3) compound , 1984 .
[100] Giovanni Scalmani,et al. Practical computation of electronic excitation in solution: vertical excitation model , 2011 .
[101] B. Champagne,et al. Resonance Raman scattering of rhodamine 6G as calculated by time-dependent density functional theory: vibronic and solvent effects. , 2008, The journal of physical chemistry. A.
[102] Paweł Sałek,et al. Benchmarking two-photon absorption with CC3 quadratic response theory, and comparison with density-functional response theory. , 2006, The Journal of chemical physics.
[103] Y. Zong,et al. Resonance Raman study of solvent dynamics in electron transfer. I. Betaine-30 in CH3CN and CD3CN , 1997 .
[104] A. Jarzęcki. Quantum-mechanical calculations of resonance Raman intensities: the weighted-gradient approximation. , 2009, The journal of physical chemistry. A.
[105] Samuel L. Kleinman,et al. Single-molecule surface-enhanced Raman spectroscopy of crystal violet isotopologues: theory and experiment. , 2011, Journal of the American Chemical Society.
[106] Jorge M. Seminario,et al. Recent developments and applications of modern density functional theory , 1996 .
[107] V. Barone,et al. Effective Time-Independent Calculations of Vibrational Resonance Raman Spectra of Isolated and Solvated Molecules Including Duschinsky and Herzberg-Teller Effects. , 2011, Journal of chemical theory and computation.
[108] P. Netti,et al. Fluorescence lifetimes and quantum yields of rhodamine derivatives: new insights from theory and experiment. , 2012, The journal of physical chemistry. A.
[109] Galen S. Loving,et al. Discrete bimodal probes for thrombus imaging. , 2012, Journal of the American Chemical Society.
[110] G. Schatz,et al. Surface-enhanced raman scattering of pyrazine at the junction between two Ag20 nanoclusters. , 2006, Nano letters.
[111] Benoît Champagne,et al. Nonlinear optical molecular switches as selective cation sensors. , 2012, Journal of the American Chemical Society.
[112] Leo Radom,et al. Harmonic Vibrational Frequencies: An Evaluation of Hartree−Fock, Møller−Plesset, Quadratic Configuration Interaction, Density Functional Theory, and Semiempirical Scale Factors , 1996 .
[113] Leeor Kronik,et al. Quasiparticle spectra from a nonempirical optimally tuned range-separated hybrid density functional. , 2012, Physical review letters.
[114] E. Heller. Time‐dependent approach to semiclassical dynamics , 1975 .
[116] M. Rohlfing,et al. Modeling the Excited States of Biological Chromophores within Many-Body Green's Function Theory. , 2010, Journal of chemical theory and computation.
[117] Chunlei Zhu,et al. Chemical molecule-induced light-activated system for anticancer and antifungal activities. , 2012, Journal of the American Chemical Society.
[118] Mauro Stener,et al. Time dependent density functional theory of core electrons excitations , 2003 .
[119] Trygve Helgaker,et al. Recent advances in wave function-based methods of molecular-property calculations. , 2012, Chemical reviews.
[120] M. Ibrahim,et al. Differential sensing of protein influences by NO and CO vibrations in heme adducts. , 2006, Journal of the American Chemical Society.
[121] D. Neuhauser,et al. Excited-State Studies of Polyacenes: A Comparative Picture Using EOMCCSD, CR-EOMCCSD(T), Range-Separated (LR/RT)-TDDFT, TD-PM3, and TD-ZINDO. , 2011, Journal of chemical theory and computation.
[122] E. Heller,et al. Time‐dependent theory of Raman scattering , 1979 .
[123] Jürg Hutter,et al. Excited state nuclear forces from the Tamm–Dancoff approximation to time-dependent density functional theory within the plane wave basis set framework , 2003 .