Improved and isotropic resolution in tomographic diffractive microscopy combining sample and illumination rotation

Tomographic Diffractive Microscopy is a technique, which permits to image transparent living specimens in three dimensions without staining. It is commonly implemented in two configurations, by either rotating the sample illumination keeping the specimen fixed, or by rotating the sample using a fixed illumination. Under the first-order Born approximation, the volume of the frequency domain that can be mapped with the rotating illumination method has the shape of a “doughnut”, which exhibits a so-called “missing cone” of non-captured frequencies, responsible for the strong resolution anisotropy characteristic of transmission microscopes. When rotating the sample, the resolution is almost isotropic, but the set of captured frequencies still exhibits a missing part, the shape of which resembles that of an apple core. Furthermore, its maximal extension is reduced compared to tomography with rotating illumination. We propose various configurations for tomographic diffractive microscopy, which combine both approaches, and aim at obtaining a high and isotropic resolution. We illustrate with simulations the expected imaging performances of these configurations.

[1]  S. P. Cutler,et al.  Microscopy , 1873, The American journal of dental science.

[2]  O. Haeberlé,et al.  High-resolution three-dimensional tomographic diffractive microscopy of transparent inorganic and biological samples. , 2009, Optics letters.

[3]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[4]  Christian Dietrich,et al.  The optical cell rotator. , 2008, Optics express.

[5]  R. Dandliker,et al.  SYMPOSIUM PAPER: Reconstruction of the three-dimensional refractive index from scattered waves , 1970 .

[6]  Lorenz T. Biegler,et al.  Large-Scale Optimization with Applications : Part I: Optimization in Inverse Problems and Design , 1997 .

[7]  P. M. van den Berg,et al.  Gradient Methods in Inverse Acoustic and Electromagnetic Scattering , 1997 .

[8]  Lorenz T. Biegler,et al.  Large-Scale Optimization with Applications , 1997 .

[9]  Thomas Neumann,et al.  Three-dimensional imaging of single isolated cell nuclei using optical projection tomography. , 2005, Optics express.

[10]  Anne Sentenac,et al.  Tomographic diffractive microscopy: basics, techniques and perspectives , 2010 .

[11]  Robert R McLeod,et al.  Tomographic Reconstruction of Weak, Replicated Index Structures Embedded in a Volume References and Links , 2022 .

[12]  Jean-Jacques Delaunay,et al.  Tomographic observation of transparent objects under coherent illumination and reconstruction by filtered backprojection and Fourier diffraction theorem , 2008, SPIE BiOS.

[13]  P. Marquet,et al.  Living specimen tomography by digital holographic microscopy: morphometry of testate amoeba. , 2006, Optics express.

[14]  Anne Sentenac,et al.  Three-dimensional subwavelength optical imaging using the coupled dipole method , 2004 .

[15]  Gabriel Popescu,et al.  Synthetic aperture tomographic phase microscopy for 3D imaging of live cells in translational motion. , 2008, Optics express.

[16]  Ichiro Yamada,et al.  Diffraction microtomography with sample rotation: influence of a missing apple core in the recorded frequency space , 2008 .

[17]  C. Depeursinge,et al.  Microscopy image resolution improvement by deconvolution of complex fields. , 2010, Optics express.

[18]  Colin J R Sheppard,et al.  Image formation in holographic tomography. , 2008, Optics letters.

[19]  Samarendra K. Mohanty,et al.  Controlled rotation of biological microscopic objects using optical line tweezers , 2003, Biotechnology Letters.

[20]  D. A. Dunnett Classical Electrodynamics , 2020, Nature.

[21]  Andrew G. Glen,et al.  APPL , 2001 .

[22]  A. Sentenac,et al.  An introduction to diffractive tomographic microscopy , 2007 .

[23]  S Kawata,et al.  Three-dimensional phase-contrast imaging by a computed-tomography microscope. , 1992, Applied optics.

[24]  B. Krauskopf,et al.  Proc of SPIE , 2003 .

[25]  Masaki Shuzo,et al.  Optical projection microtomography of transparent objects , 2007, European Conference on Biomedical Optics.

[26]  Satoshi Kawata,et al.  Optical microscope tomography. I. Support constraint , 1987 .

[27]  P. Chaumet,et al.  Superresolution in total internal reflection tomography. , 2005, Journal of the Optical Society of America. A, Optics, image science, and vision.

[28]  E. Wolf Three-dimensional structure determination of semi-transparent objects from holographic data , 1969 .

[29]  E. Cuche,et al.  Cell refractive index tomography by digital holographic microscopy. , 2006, Optics letters.

[30]  Bertrand Simon,et al.  Multi-kernel deconvolution applied to confocal fluorescence microscopy with engineered point spread function , 2006 .

[31]  Yongkeun Park,et al.  Refractive index maps and membrane dynamics of human red blood cells parasitized by Plasmodium falciparum , 2008, Proceedings of the National Academy of Sciences.

[32]  W. Górski,et al.  Tomographic imaging of photonic crystal fibers. , 2007, Optics letters.

[33]  O. Haeberlé,et al.  Tomographic diffractive microscopy of transparent samples , 2008 .

[34]  B. LE SAUX,et al.  Isotropic high‐resolution three‐dimensional confocal micro‐rotation imaging for non‐adherent living cells , 2009, Journal of microscopy.

[35]  D. Malacara-Hernández,et al.  PRINCIPLES OF OPTICS , 2011 .

[36]  Hugues Giovannini,et al.  Experimental demonstration of quantitative imaging beyond Abbe's limit with optical diffraction tomography. , 2009, Physical review letters.

[37]  D. Sampson,et al.  High-resolution, wide-field object reconstruction with synthetic aperture Fourier holographic optical microscopy. , 2009, Optics express.

[38]  Bertrand Simon,et al.  High‐resolution tomographic diffractive microscopy of biological samples , 2010, Journal of biophotonics.

[39]  Stefan W. Hell,et al.  Fundamental improvement of resolution with a 4Pi-confocal fluorescence microscope using two-photon excitation , 1992 .

[40]  K. Nugent,et al.  Quantitative phase tomography , 2000 .

[41]  Jens Flügge,et al.  Diffraction microtomography with sample rotation: primary result on the influence of a missing apple core in the recorded frequency space , 2009, Optical Metrology.

[42]  Victor H Hernandez,et al.  Nature Methods , 2007 .

[43]  O. Haeberlé,et al.  Holographic microscopy and diffractive microtomography of transparent samples , 2008 .

[44]  V. Lauer New approach to optical diffraction tomography yielding a vector equation of diffraction tomography and a novel tomographic microscope , 2002, Journal of microscopy.

[45]  Zeev Zalevsky,et al.  Synthetic aperture superresolution with multiple off-axis holograms. , 2006, Journal of the Optical Society of America. A, Optics, image science, and vision.

[46]  G Maire,et al.  Mirror-assisted tomographic diffractive microscopy with isotropic resolution. , 2010, Optics letters.

[47]  M. Debailleul,et al.  High resolution reflection tomographic diffractive microscopy , 2010 .

[48]  C. Fang-Yen,et al.  Optical diffraction tomography for high resolution live cell imaging. , 2009, Optics express.

[49]  N. Streibl Three-dimensional imaging by a microscope , 1985 .