Biotechnological Improvements of Cold-Adapted Enzymes: Commercialization via an Integrated Approach
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Taha | Gea Guerriero | Khawar Sohail Siddiqui | Ahsan Mushir Shemsi | Tahria Najnin | Haluk Ertan | Taha | H. Ertan | K. Siddiqui | G. Guerriero | T. Najnin | A. M. Shemsi
[1] A. Yamagishi,et al. Ancestral amino acid substitution improves the thermal stability of recombinant lignin-peroxidase from white-rot fungi, Phanerochaete chrysosporium strain UAMH 3641. , 2015, Protein engineering, design & selection : PEDS.
[2] J. Hermoso,et al. Directed Evolution of β-Glucosidase A from Paenibacillus polymyxa to Thermal Resistance* , 2000, The Journal of Biological Chemistry.
[3] F. Lu,et al. Improvement of alkali stability and thermostability of Paenibacillus campinasensis Family-11 xylanase by directed evolution and site-directed mutagenesis , 2013, Journal of Industrial Microbiology & Biotechnology.
[4] J. Pfaendtner,et al. Comparison of three ionic liquid-tolerant cellulases by molecular dynamics. , 2015, Biophysical journal.
[5] J. Dunitz. The entropic cost of bound water in crystals and biomolecules. , 1994, Science.
[6] J. Dordick,et al. Imprinting Enzymes for Use in Organic Media , 2001 .
[7] Geir Villy Isaksen,et al. Enzyme surface rigidity tunes the temperature dependence of catalytic rates , 2016, Proceedings of the National Academy of Sciences.
[8] J. Macdonald,et al. Structural analysis of thermostabilizing mutations of cocaine esterase. , 2010, Protein engineering, design & selection : PEDS.
[9] D. Parkin,et al. A novel approach for enhancing the catalytic efficiency of a protease at low temperature: Reduction in substrate inhibition by chemical modification , 2009, Biotechnology and bioengineering.
[10] P. D’haeseleer,et al. Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community , 2014, Biotechnology for Biofuels.
[11] S. Matsukawa,et al. Cloning and characterization of a cold-adapted endo-1,5-α-L-arabinanase from Paenibacillus polymyxa and rational design for acidic applicability. , 2014, Journal of agricultural and food chemistry.
[12] Heng Xu,et al. Characterization of a mutant glucose isomerase from Thermoanaerobacterium saccharolyticum , 2014, Journal of Industrial Microbiology & Biotechnology.
[13] S. Kjelleberg,et al. Enhancement of lipase stability and productivity through chemical modification and its application to latex-based polymer emulsions , 2017 .
[14] A. J. Afzal,et al. Innovative kinetic and thermodynamic analysis of a purified superactive xylanase from Scopulariopsis sp. , 2005, Applied biochemistry and biotechnology.
[15] Wei Liu,et al. Molecular imprinting and immobilization of cellulase onto magnetic Fe3O4@SiO2 nanoparticles. , 2014, Journal of nanoscience and nanotechnology.
[16] J. Ottosson,et al. Rational design of enantioselective enzymes requires considerations of entropy , 2001, Protein science : a publication of the Protein Society.
[17] B. G. Davis. Chemical modification of biocatalysts. , 2003, Current opinion in biotechnology.
[18] S. Akanuma,et al. Substitutions of coenzyme-binding, nonpolar residues improve the low-temperature activity of thermophilic dehydrogenases. , 2011, Biochemistry.
[19] H. Naderi-manesh,et al. Remarkable improvements of a neutral protease activity and stability share the same structural origins. , 2010, Protein engineering, design & selection : PEDS.
[20] S. Sen,et al. Green Polymer Chemistry: Enzyme Catalysis for Polymer Functionalization , 2015, Molecules.
[21] J. Kur,et al. Immobilized preparation of cold-adapted and halotolerant Antarctic beta-galactosidase as a highly stable catalyst in lactose hydrolysis. , 2007, FEMS microbiology ecology.
[22] Y. Hu,et al. Chemical modification for improving activity and stability of lipase B from Candida antarctica with imidazolium-functional ionic liquids. , 2013, Organic & biomolecular chemistry.
[23] G. Feller,et al. Activity-Stability Relationships in Extremophilic Enzymes* , 2003, The Journal of Biological Chemistry.
[24] T. E. Abraham,et al. Preparation and characterization of cross-linked enzyme aggregates (CLEA) of subtilisin for controlled release applications. , 2008, International journal of biological macromolecules.
[25] Ricardo Cavicchioli,et al. Cold-adapted enzymes. , 2006, Annual review of biochemistry.
[26] M. Himmel,et al. Charge engineering of cellulases improves ionic liquid tolerance and reduces lignin inhibition , 2014, Biotechnology and bioengineering.
[27] Reinu E. Abraham,et al. Suitability of magnetic nanoparticle immobilised cellulases in enhancing enzymatic saccharification of pretreated hemp biomass , 2014, Biotechnology for Biofuels.
[28] B. Rost,et al. Better prediction of functional effects for sequence variants , 2015, BMC Genomics.
[29] A. Wittinghofer,et al. The GAP arginine finger movement into the catalytic site of Ras increases the activation entropy , 2008, Proceedings of the National Academy of Sciences.
[30] J. Blamey,et al. Cold and Hot Extremozymes: Industrial Relevance and Current Trends , 2015, Front. Bioeng. Biotechnol..
[31] P. Heikinheimo,et al. Directed evolution on the cold adapted properties of TAB5 alkaline phosphatase. , 2008, Protein engineering, design & selection : PEDS.
[32] H. Ertan,et al. A new broad specificity alkaline metalloprotease from a Pseudomonas sp. isolated from refrigerated milk: Role of calcium in improving enzyme productivity , 2015 .
[33] Ngoc Truongvan,et al. Flexibility and Stability Trade-Off in Active Site of Cold-Adapted Pseudomonas mandelii Esterase EstK. , 2016, Biochemistry.
[34] R. Singhal,et al. An alkali stable cellulase by chemical modification using maleic anhydride , 2002 .
[35] Piotr Bruździak,et al. Influence of osmolytes on protein and water structure: a step to understanding the mechanism of protein stabilization. , 2013, The journal of physical chemistry. B.
[36] Holger Gohlke,et al. Constraint Network Analysis (CNA): A Python Software Package for Efficiently Linking Biomacromolecular Structure, Flexibility, (Thermo-)Stability, and Function , 2013, J. Chem. Inf. Model..
[37] G. Feller,et al. Psychrophilic enzymes: revisiting the thermodynamic parameters of activation may explain local flexibility. , 2000, Biochimica et biophysica acta.
[38] Y. Honda,et al. Reaction of Chemically Modified Lignin Peroxidase of Phanerochaete chrysosporium in Water-miscible Organic Solvents , 1996 .
[39] R. Casadio,et al. Modulating the thermostability of Endoglucanase I from Trichoderma reesei using computational approaches. , 2015, Protein engineering, design & selection : PEDS.
[40] T. Williams,et al. Biotechnological uses of enzymes from psychrophiles , 2011, Microbial biotechnology.
[41] P. Yancey,et al. Co-evolution of proteins and solutions: protein adaptation versus cytoprotective micromolecules and their roles in marine organisms , 2015, The Journal of Experimental Biology.
[42] R. Say,et al. Design and Preparation of Nano-Lignin Peroxidase (NanoLiP) by Protein Block Copolymerization Approach , 2016, Polymers.
[43] R. Wolfenden,et al. The depth of chemical time and the power of enzymes as catalysts. , 2001, Accounts of chemical research.
[44] Jian Shi,et al. Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose , 2014, Proceedings of the National Academy of Sciences.
[45] Haiquan Yang,et al. Molecular engineering of industrial enzymes: recent advances and future prospects , 2013, Applied Microbiology and Biotechnology.
[46] C. López,et al. Magnetic Cross-Linked Enzyme Aggregates (mCLEAs) of Candida antarctica Lipase: An Efficient and Stable Biocatalyst for Biodiesel Synthesis , 2014, PloS one.
[47] R. Stevanato,et al. Enzyme immobilization: an update , 2013, Journal of chemical biology.
[48] O. Yesil‐Celiktas,et al. Characterization, immobilization, and activity enhancement of cellulase treated with supercritical CO2 , 2015, Cellulose.
[49] V. Uversky,et al. Role of lysine versus arginine in enzyme cold‐adaptation: Modifying lysine to homo‐arginine stabilizes the cold‐adapted α‐amylase from Pseudoalteramonas haloplanktis , 2006, Proteins.
[50] M. Santiago,et al. Discovery, Molecular Mechanisms, and Industrial Applications of Cold-Active Enzymes , 2016, Front. Microbiol..
[51] Yaroslava G. Yingling,et al. The relationship between enhanced enzyme activity and structural dynamics in ionic liquids: a combined computational and experimental study. , 2014, Physical Chemistry, Chemical Physics - PCCP.
[52] K. Siddiqui. Defying the activity-stability trade-off in enzymes: taking advantage of entropy to enhance activity and thermostability. , 2017, Critical reviews in biotechnology.
[53] A. Dasgupta,et al. Enhanced functionality and stabilization of a cold active laccase using nanotechnology based activation-immobilization. , 2015, Bioresource technology.
[54] H. Ertan,et al. Versatile peroxidase degradation of humic substances: use of isothermal titration calorimetry to assess kinetics, and applications to industrial wastes. , 2014, Journal of biotechnology.
[55] R. C. Kasana,et al. Cellulases from psychrophilic microorganisms: a review , 2011, Journal of basic microbiology.
[56] K. Suhre,et al. Characteristics of mutants designed to incorporate a new ion pair into the structure of a cold adapted subtilisin-like serine proteinase. , 2009, Biochimica et biophysica acta.
[57] R. K. Apenten. Low temperature organic phase biocatalysis using cold-adapted enzymes , 1999 .
[58] I. Tanaka,et al. Elucidation of stability determinants of cold-adapted monomeric isocitrate dehydrogenase from a psychrophilic bacterium, Colwellia maris, by construction of chimeric enzymes. , 2005, Microbiology.
[59] Shunsuke Tomita,et al. Small Amine Molecules: Solvent Design Toward Facile Improvement of Protein Stability Against Aggregation and Inactivation. , 2015, Current pharmaceutical biotechnology.
[60] Jian Dong Cui,et al. Optimization protocols and improved strategies of cross-linked enzyme aggregates technology: current development and future challenges , 2015, Critical reviews in biotechnology.
[61] H. Ertan,et al. Destructuring plant biomass: focus on fungal and extremophilic cell wall hydrolases. , 2015, Plant science : an international journal of experimental plant biology.
[62] T. Ko,et al. Improving the catalytic performance of a GH11 xylanase by rational protein engineering , 2015, Applied Microbiology and Biotechnology.
[63] R. Bhat,et al. Why Is Trehalose an Exceptional Protein Stabilizer? , 2003, Journal of Biological Chemistry.
[64] M. Czjzek,et al. The linker region plays a key role in the adaptation to cold of the cellulase from an Antarctic bacterium. , 2007, The Biochemical journal.
[65] Woodward,et al. Poly(ethylene glycol)-modified ligninase enhances pentachlorophenol biodegradation in water-solvent mixtures , 1999, Biotechnology and bioengineering.
[66] J. Kaur,et al. Disruption of N terminus long range non covalent interactions shifted temp.opt 25°C to cold: Evolution of point mutant Bacillus lipase by error prone PCR. , 2016, Gene.
[67] F. Péter,et al. Cellulase immobilized by sol–gel entrapment for efficient hydrolysis of cellulose , 2013, Bioprocess and Biosystems Engineering.
[68] G. Feller. Psychrophilic Enzymes: From Folding to Function and Biotechnology , 2013, Scientifica.
[70] J. Iborra,et al. Over-stabilization of Candida antarctica lipase B by ionic liquids in ester synthesis , 2001, Biotechnology Letters.
[71] Karl Hult,et al. Substrate entropy in enzyme enantioselectivity: An experimental and molecular modeling study of a lipase , 2002, Protein science : a publication of the Protein Society.
[72] Haoran Yu,et al. Engineering proteins for thermostability through rigidifying flexible sites. , 2014, Biotechnology advances.
[73] R. Bannen,et al. Bioinformatic method for protein thermal stabilization by structural entropy optimization , 2008, Proceedings of the National Academy of Sciences.
[74] K. Siddiqui,et al. Partial and complete alteration of surface charges of carboxymethylcellulase by chemical modification: thermostabilization in water-miscible organic solvent , 1999 .
[75] M. Housaindokht,et al. Chemical modification of biocatalyst for function in supercritical CO2: In silico redesign of stable lipase , 2016 .
[76] E. García‐Verdugo,et al. Active biopolymers in green non-conventional media: a sustainable tool for developing clean chemical processes. , 2015, Chemical communications.
[77] G. Baker,et al. New eutectic ionic liquids for lipase activation and enzymatic preparation of biodiesel. , 2011, Organic & biomolecular chemistry.
[78] Y. Takada,et al. Effects of the combined substitutions of amino acid residues on thermal properties of cold-adapted monomeric isocitrate dehydrogenases from psychrophilic bacteria , 2014, Extremophiles.
[79] Kazuya Koumoto,et al. Quick Activation/Stabilization of a α-Glucosidase-catalyzed Hydrolysis Reaction by Addition of a Betaine-type Metabolite Analogue , 2016 .
[80] K. Siddiqui. Some like it hot, some like it cold: Temperature dependent biotechnological applications and improvements in extremophilic enzymes. , 2015, Biotechnology advances.
[81] G. Feller,et al. A nondetergent sulfobetaine prevents protein aggregation in microcalorimetric studies. , 2006, Analytical biochemistry.
[82] Ashok Kumar,et al. Immobilization of a novel cold active esterase onto Fe3O4∼cellulose nano-composite enhances catalytic properties. , 2016, International journal of biological macromolecules.
[83] P. Millner,et al. Chemical modification and immobilisation of lipase B from Candida antarctica onto mesoporous silicates , 2010 .
[84] K. Sergeant,et al. Wood biosynthesis and typologies: a molecular rhapsody. , 2014, Tree physiology.
[85] Xi-Ying Zhang,et al. Novel Use for the Osmolyte Trimethylamine N-oxide: Retaining the Psychrophilic Characters of Cold-Adapted Protease Deseasin MCP-01 and Simultaneously Improving its Thermostability , 2009, Marine Biotechnology.
[86] M. Vaultier,et al. How to produce biodiesel easily using a green biocatalytic approach in sponge-like ionic liquids , 2013 .
[87] M. Vaultier,et al. Stabilizing immobilized cellulase by ionic liquids for saccharification of cellulose solutions in 1-butyl-3-methylimidazolium chloride , 2011 .
[88] Samuel S. Cho,et al. Entropic stabilization of proteins by TMAO. , 2011, The journal of physical chemistry. B.
[89] A. Klibanov. Improving enzymes by using them in organic solvents , 2001, Nature.
[90] K. Meng,et al. A novel cold-active xylanase gene from the environmental DNA of goat rumen contents: direct cloning, expression and enzyme characterization. , 2011, Bioresource Technology.
[91] D. Parkin,et al. A chemically modified alpha-amylase with a molten-globule state has entropically driven enhanced thermal stability. , 2010, Protein engineering, design & selection : PEDS.
[92] Wantai Yang,et al. Net-Immobilization of β-glucosidase on Nonwoven Fabrics to Lower the Cost of “Cellulosic Ethanol” and Increase Cellulose Conversions , 2016, Scientific Reports.
[93] K. Siddiqui,et al. Carboxy‐group modification: high‐temperature activation of charge‐neutralized and charge‐reversed β‐glucosidases from Aspergillus niger , 1998, Biotechnology and Applied Biochemistry.
[94] M. Rashid,et al. Thermostabilization of carboxymethylcellulase from Aspergillus niger by carboxyl group modification , 1997, Biotechnology Letters.
[95] E. Bayer,et al. Approaches for improving thermostability characteristics in cellulases. , 2012, Methods in enzymology.
[96] S. DasSarma,et al. Function and biotechnology of extremophilic enzymes in low water activity , 2012, Aquatic biosystems.
[97] F. Arnold,et al. Directed evolution study of temperature adaptation in a psychrophilic enzyme. , 2000, Journal of molecular biology.
[98] G. Antranikian,et al. A cold-adapted esterase of a novel marine isolate, Pseudoalteromonas arctica: gene cloning, enzyme purification and characterization , 2010, Extremophiles.
[99] G. Feller,et al. Optimization to Low Temperature Activity in Psychrophilic Enzymes , 2012, International journal of molecular sciences.
[100] Xiaoliang Liang,et al. Improvement of low‐temperature caseinolytic activity of a thermophilic subtilase by directed evolution and site‐directed mutagenesis , 2009, Biotechnology and bioengineering.
[101] A. Metaxas,et al. Overlap in the distributions between indigenous and non-indigenous decapods in a brackish micro-tidal system , 2009 .
[102] S. A. Bokhari,et al. Kinetic and thermodynamic study of a chemically modified highly active xylanase from Scopulariopsis sp: existence of an essential amino group. , 2007, Applied biochemistry and biotechnology.
[103] H. Ertan,et al. Kinetic and thermodynamic characterization of the functional properties of a hybrid versatile peroxidase using isothermal titration calorimetry: Insight into manganese peroxidase activation and lignin peroxidase inhibition. , 2012, Biochimie.
[104] F. Arnold,et al. Patterns of adaptation in a laboratory evolved thermophilic enzyme. , 2001, Biochimica et biophysica acta.
[105] R. Cavicchioli,et al. The Active Site Is the Least Stable Structure in the Unfolding Pathway of a Multidomain Cold-Adapted α-Amylase , 2005, Journal of bacteriology.
[106] D. Huggins. Quantifying the Entropy of Binding for Water Molecules in Protein Cavities by Computing Correlations , 2015, Biophysical journal.
[107] A. Fresco-Taboada,et al. Nucleoside 2'-Deoxyribosyltransferase from Psychrophilic Bacterium Bacillus psychrosaccharolyticus — Preparation of an Immobilized Biocatalyst for the Enzymatic Synthesis of Therapeutic Nucleosides , 2014, Molecules.
[108] J. Iborra,et al. Understanding structure-stability relationships of Candida antartica lipase B in ionic liquids. , 2005, Biomacromolecules.
[109] W. Windsor,et al. Improving tolerance of Candida antarctica lipase B towards irreversible thermal inactivation through directed evolution. , 2003, Protein engineering.
[110] A. Dasgupta,et al. Reusable glucose sensing using carbon nanotube-based self-assembly. , 2013, Nanoscale.
[111] C. Zhan,et al. Rational Design, Preparation, and Characterization of a Therapeutic Enzyme Mutant with Improved Stability and Function for Cocaine Detoxification , 2014, ACS chemical biology.
[112] Immobilised lipase on structured supports containing covalently attached ionic liquids for the continuous synthesis of biodiesel in scCO2. , 2012, ChemSusChem.
[113] Hein J Wijma,et al. Structure- and sequence-analysis inspired engineering of proteins for enhanced thermostability. , 2013, Current opinion in structural biology.
[114] Marianne Rooman,et al. Predicting protein thermal stability changes upon point mutations using statistical potentials: Introducing HoTMuSiC , 2016, Scientific Reports.
[115] E. García‐Verdugo,et al. Supercritical Synthesis of Biodiesel , 2012, Molecules.
[116] Kun-Lin Yang,et al. Entrapment of cross-linked cellulase colloids in alginate beads for hydrolysis of cellulose. , 2016, Colloids and surfaces. B, Biointerfaces.
[117] Hua Zhao,et al. Methods for stabilizing and activating enzymes in ionic liquids--a review , 2010 .
[118] Jean-Francois Hausman,et al. Lignocellulosic biomass: Biosynthesis, degradation, and industrial utilization , 2016 .
[119] G. Somero,et al. Hot spots in cold adaptation: localized increases in conformational flexibility in lactate dehydrogenase A4 orthologs of Antarctic notothenioid fishes. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[120] R. Kazlauskas,et al. Biocatalysis in ionic liquids - advantages beyond green technology. , 2003, Current opinion in biotechnology.
[121] Jian Tian,et al. Improving the thermostability of methyl parathion hydrolase from Ochrobactrum sp. M231 using a computationally aided method , 2012, Applied Microbiology and Biotechnology.
[122] S. Banta,et al. Modular exchange of substrate-binding loops alters both substrate and cofactor specificity in a member of the aldo-keto reductase superfamily. , 2013, Protein engineering, design & selection : PEDS.
[123] R. Cavicchioli,et al. Improved activity and stability of alkaline phosphatases from psychrophilic and mesophilic organisms by chemically modifying aliphatic or amino groups using tetracarboxy-benzophenone derivatives. , 2004, Cellular and molecular biology.
[124] Jinlai Miao,et al. Immobilization of Cold-Active Cellulase from Antarctic Bacterium and Its Use for Kelp Cellulose Ethanol Fermentation , 2015 .
[125] Ricardo Cavicchioli,et al. Improved thermal stability and activity in the cold-adapted lipase B from Candida antarctica following chemical modification with oxidized polysaccharides , 2005, Extremophiles.
[126] T. Tzanov,et al. Studies of stabilization of native catalase using additives , 2002 .