A heme fusion tag for protein affinity purification and quantification

We report a novel affinity‐based purification method for proteins expressed in Escherichia coli that uses the coordination of a heme tag to an L‐histidine‐immobilized sepharose (HIS) resin. This approach provides an affinity purification tag visible to the eye, facilitating tracking of the protein. We show that azurin and maltose binding protein are readily purified from cell lysate using the heme tag and HIS resin. Mild conditions are used; heme‐tagged proteins are bound to the HIS resin in phosphate buffer, pH 7.0, and eluted by adding 200–500 mM imidazole or binding buffer at pH 5 or 8. The HIS resin exhibits a low level of nonspecific binding of untagged cellular proteins for the systems studied here. An additional advantage of the heme tag‐HIS method for purification is that the heme tag can be used for protein quantification by using the pyridine hemochrome absorbance method for heme concentration determination.

[1]  Z. Jia,et al.  Structure of the Escherichia coli O157:H7 Heme Oxygenase ChuS in Complex with Heme and Enzymatic Inactivation by Mutation of the Heme Coordinating Residue His-193* , 2006, Journal of Biological Chemistry.

[2]  M. Braun,et al.  A heme tag for in vivo synthesis of artificial cytochromes , 2005, Applied Microbiology and Biotechnology.

[3]  Ben Dunn Quantitative Amino Acid Analysis , 2006, Current protocols in molecular biology.

[4]  F. Cutruzzolà,et al.  Backbone dynamics and hydrogen exchange of Pseudomonas aeruginosa ferricytochrome c551 , 2002, JBIC Journal of Biological Inorganic Chemistry.

[5]  Tadashi Mizoguchi,et al.  Blue to type 2 binding. Copper(II) and cobalt(II) derivatives of a Cys112Asp mutant of Pseudomonas aeruginosa azurin , 1992 .

[6]  D. Stevenson,et al.  Selective inhibition of heme oxygenase, without inhibition of nitric oxide synthase or soluble guanylyl cyclase, by metalloporphyrins at low concentrations. , 1999, Drug metabolism and disposition: the biological fate of chemicals.

[7]  K. Terpe Overview of tag protein fusions: from molecular and biochemical fundamentals to commercial systems , 2002, Applied Microbiology and Biotechnology.

[8]  N. Rosato,et al.  Purification and characterization of a non-reconstitutable azurin, obtained by heterologous expression of the Pseudomonas aeruginosa azu gene in Escherichia coli. , 1990, Biochimica et biophysica acta.

[9]  Rachel Zufferey,et al.  Overproduction of theBradyrhizobium japonicum c-Type Cytochrome Subunits of thecbb3Oxidase inEscherichia coli , 1998 .

[10]  K. Bren,et al.  Characterization of recombinant horse cytochrome c synthesized with the assistance of Escherichia coli cytochrome c maturation factors. , 2002, Biochimica et biophysica acta.

[11]  M. Maines Current protocols in toxicology , 1999 .

[12]  B. Trumpower,et al.  Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra. , 1987, Analytical biochemistry.

[13]  Song Tan,et al.  Comparison of affinity tags for protein purification. , 2005, Protein expression and purification.

[14]  G. Mei,et al.  Spectroscopic properties of an engineered maltose binding protein. , 1997, Protein engineering.

[15]  H. Marques Insights into porphyrin chemistry provided by the microperoxidases, the haempeptides derived from cytochrome c. , 2007, Dalton transactions.

[16]  M. Uhlén,et al.  Affinity fusion strategies for detection, purification, and immobilization of recombinant proteins. , 1997, Protein expression and purification.

[17]  Robert D Finn,et al.  Rainbow tags: a visual tag system for recombinant protein expression and purification. , 2005, BioTechniques.

[18]  G. Petersen,et al.  Current strategies for the use of affinity tags and tag removal for the purification of recombinant proteins. , 2006, Protein expression and purification.

[19]  Igor L. Medintz,et al.  A fluorescence resonance energy transfer sensor based on maltose binding protein. , 2003, Bioconjugate chemistry.

[20]  J. Falke,et al.  Purification of proteins using polyhistidine affinity tags. , 2000, Methods in enzymology.

[21]  J. Markwell,et al.  Assays for Determination of Protein Concentration , 2007, Current protocols in protein science.

[22]  L. Zolla,et al.  Metal Binding to Pseudomonas aeruginosa Azurin: a Kinetic Investigation , 2000, Zeitschrift fur Naturforschung. C, Journal of biosciences.

[23]  P. Sinclair,et al.  Measurement of Heme Concentration , 1999, Current protocols in toxicology.

[24]  J. Bell,et al.  A convenient method for affinity purification of maltose binding protein fusions. , 1998, Journal of biotechnology.

[25]  S. Ferguson,et al.  What is the substrate specificity of the System I cytochrome c biogenesis apparatus? , 2006, Biochemical Society transactions.

[26]  H. Schulz,et al.  Overproduction of the Bradyrhizobium japonicum c-type cytochrome subunits of the cbb3 oxidase in Escherichia coli. , 1998, Biochemical and biophysical research communications.

[27]  Joseph J. Falke,et al.  [16] Purification of proteins using polyhistidine affinity tags , 2000 .

[28]  M. Hill,et al.  Integrity of thermus thermophilus cytochrome c552 Synthesized by escherichia coli cells expressing the host‐specific cytochrome c maturation genes, ccmABCDEFGH: Biochemical, spectral, and structural characterization of the recombinant protein , 2000, Protein science : a publication of the Protein Society.

[29]  D. Waugh,et al.  A generic protocol for the expression and purification of recombinant proteins in Escherichia coli using a combinatorial His6-maltose binding protein fusion tag , 2007, Nature Protocols.

[30]  A. Lombardi,et al.  Peptide-based heme-protein models. , 2001, Chemical reviews.

[31]  I. Pozdnyakova,et al.  Studies of Pseudomonas aeruginosa azurin mutants: cavities in beta-barrel do not affect refolding speed. , 2002, Biophysical journal.

[32]  D. Stevenson,et al.  Characterization of porphyrin heme oxygenase inhibitors. , 1996, Canadian journal of physiology and pharmacology.

[33]  C. Stoscheck,et al.  Quantitation of protein. , 1990, Methods in enzymology.

[34]  B. Dunn,et al.  Quantitative Amino Acid Analysis , 1995, Current protocols in protein science.

[35]  P. Riggs Expression and Purification of Maltose‐Binding Protein Fusions , 1994, Current protocols in molecular biology.

[36]  JohnB . Taylor,et al.  Cytochrome c Biogenesis: Mechanisms for Covalent Modifications and Trafficking of Heme and for Heme-Iron Redox Control , 2009, Microbiology and Molecular Biology Reviews.

[37]  R. Varadarajan,et al.  Strategy for purifying maltose binding protein fusion proteins by affinity precipitation. , 2008, Journal of chromatography. A.