Next generation sequencing under de novo genome assembly
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[1] Mihai Pop,et al. Exploiting sparseness in de novo genome assembly , 2012, BMC Bioinformatics.
[2] Eugene W. Myers,et al. A whole-genome assembly of Drosophila. , 2000, Science.
[3] P. Pevzner,et al. An Eulerian path approach to DNA fragment assembly , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[4] Lukas Wagner,et al. A Greedy Algorithm for Aligning DNA Sequences , 2000, J. Comput. Biol..
[5] Lars Bolund,et al. Building the sequence map of the human pan-genome , 2010, Nature Biotechnology.
[6] Juliane C. Dohm,et al. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. , 2007, Genome research.
[7] G. Weinstock,et al. The Atlas genome assembly system. , 2004, Genome research.
[8] S. Moore,et al. Short reads, circular genome: skimming solid sequence to construct the bighorn sheep mitochondrial genome. , 2012, The Journal of heredity.
[9] M. Schatz,et al. Genome assembly forensics: finding the elusive mis-assembly , 2008, Genome Biology.
[10] Bairong Shen,et al. A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies , 2011, PloS one.
[11] Steven Skiena,et al. Crystallizing short-read assemblies around seeds , 2009, BMC Bioinformatics.
[12] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[13] C. Nusbaum,et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. , 2008, Genome research.
[14] B. Berger,et al. ARACHNE: a whole-genome shotgun assembler. , 2002, Genome research.
[15] Daniel R. Zerbino,et al. Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler , 2009, PloS one.
[16] Siu-Ming Yiu,et al. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth , 2012, Bioinform..
[17] N. Friedman,et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.
[18] M. Tomita,et al. Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics , 2012, Genes to cells : devoted to molecular & cellular mechanisms.
[19] T. Dallman,et al. Performance comparison of benchtop high-throughput sequencing platforms , 2012, Nature Biotechnology.
[20] Matthew B. Kerby,et al. Landscape of next-generation sequencing technologies. , 2011, Analytical chemistry.
[21] Jian Ye,et al. Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction , 2012, BMC Bioinformatics.
[22] Niall J. Haslam,et al. An analysis of the feasibility of short read sequencing , 2005, Nucleic acids research.
[23] E. Mauceli,et al. Whole-genome sequence assembly for mammalian genomes: Arachne 2. , 2003, Genome research.
[24] Huanming Yang,et al. De novo assembly of human genomes with massively parallel short read sequencing. , 2010, Genome research.
[25] Jian Wang,et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler , 2012, GigaScience.
[26] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[27] David Hernández,et al. De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. , 2008, Genome research.
[28] K. Voelkerding,et al. Next-generation sequencing: from basic research to diagnostics. , 2009, Clinical chemistry.
[29] M. Gerstein,et al. RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.
[30] Yude Yu,et al. The next-generation sequencing technology and application , 2010, Protein & Cell.
[31] H. Swerdlow,et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers , 2012, BMC Genomics.
[32] Siu-Ming Yiu,et al. IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels , 2013, Bioinform..
[33] B. Wold,et al. Sequence census methods for functional genomics , 2008, Nature Methods.
[34] Martin Vingron,et al. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels , 2012, Bioinform..
[35] René L. Warren,et al. Assembling millions of short DNA sequences using SSAKE , 2006, Bioinform..
[36] Adam M. Phillippy,et al. Comparative genome assembly , 2004, Briefings Bioinform..
[37] M. Pop,et al. Sequence assembly demystified , 2013, Nature Reviews Genetics.
[38] Zhong Wang,et al. Next-generation transcriptome assembly , 2011, Nature Reviews Genetics.
[39] Dawei Li,et al. The sequence and de novo assembly of the giant panda genome , 2010, Nature.
[40] Vincent J. Magrini,et al. Extending assembly of short DNA sequences to handle error , 2007, Bioinform..
[41] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.