Lung nodule detection from CT scans using 3D convolutional neural networks without candidate selection

Early detection of lung nodules from CT scans is key to improving lung cancer treatment, but poses a significant challenge for radiologists due to the high throughput required of them. Computer-Aided Detection (CADe) systems aim to automatically detect these nodules with computer algorithms, thus improving diagnosis. These systems typically use a candidate selection step, which identifies all objects that resemble nodules, followed by a machine learning classifier which separates true nodules from false positives. We create a CADe system that uses a 3D convolutional neural network (CNN) to detect nodules in CT scans without a candidate selection step. Using data from the LIDC database, we train a 3D CNN to analyze subvolumes from anywhere within a CT scan and output the probability that each subvolume contains a nodule. Once trained, we apply our CNN to detect nodules from entire scans, by systematically dividing the scan into overlapping subvolumes which we input into the CNN to obtain the corresponding probabilities. By enabling our network to process an entire scan, we expect to streamline the detection process while maintaining its effectiveness. Our results imply that with continued training using an iterative training scheme, the one-step approach has the potential to be highly effective.

[1]  C. White,et al.  Missed lung cancer on chest radiography and computed tomography. , 2012, Seminars in ultrasound, CT, and MR.

[2]  Bram van Ginneken,et al.  Off-the-shelf convolutional neural network features for pulmonary nodule detection in computed tomography scans , 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

[3]  C. Mathers,et al.  GLOBOCAN 2012 v1.0, Cancer Incidence and Mortality Worldwide: IARC CancerBase No. 11 [Internet]. Lyon, France: International Agency for Research on Cancer , 2013 .

[4]  Berkman Sahiner,et al.  3D convolutional neural network for automatic detection of lung nodules in chest CT , 2017, Medical Imaging.

[5]  Manuel G. Penedo,et al.  Computer-aided diagnosis: a neural-network-based approach to lung nodule detection , 1998, IEEE Transactions on Medical Imaging.

[6]  Sergey Ioffe,et al.  Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift , 2015, ICML.

[7]  Hao Chen,et al.  Validation, comparison, and combination of algorithms for automatic detection of pulmonary nodules in computed tomography images: The LUNA16 challenge , 2016, Medical Image Anal..

[8]  Lutz Prechelt,et al.  Automatic early stopping using cross validation: quantifying the criteria , 1998, Neural Networks.

[9]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[10]  Yuanzhi Cheng,et al.  Computer-Aided Detection of Lung Nodules with Fuzzy Min-Max Neural Network for False Positive Reduction , 2014, 2014 Sixth International Conference on Intelligent Human-Machine Systems and Cybernetics.

[11]  WU KarenT,et al.  Results , 1969 .

[12]  Jörg Denzinger,et al.  Lung nodule detection in CT images using deep convolutional neural networks , 2016, 2016 International Joint Conference on Neural Networks (IJCNN).

[13]  Yoshua Bengio,et al.  Random Search for Hyper-Parameter Optimization , 2012, J. Mach. Learn. Res..

[14]  Jian Sun,et al.  Delving Deep into Rectifiers: Surpassing Human-Level Performance on ImageNet Classification , 2015, 2015 IEEE International Conference on Computer Vision (ICCV).

[15]  Stephen M. Moore,et al.  The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository , 2013, Journal of Digital Imaging.

[16]  Hao Chen,et al.  Multilevel Contextual 3-D CNNs for False Positive Reduction in Pulmonary Nodule Detection , 2017, IEEE Transactions on Biomedical Engineering.

[17]  A. R. Talebpour,et al.  Automatic lung nodules detection in computed tomography images using nodule filtering and neural networks , 2014, 2014 22nd Iranian Conference on Electrical Engineering (ICEE).

[18]  Richard C. Pais,et al.  The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans. , 2011, Medical physics.

[19]  Jimmy Ba,et al.  Adam: A Method for Stochastic Optimization , 2014, ICLR.

[20]  Nitish Srivastava,et al.  Dropout: a simple way to prevent neural networks from overfitting , 2014, J. Mach. Learn. Res..

[21]  Vivek Vaidya,et al.  Lung nodule detection in CT using 3D convolutional neural networks , 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017).