Mapping and pyramiding of qualitative and quantitative resistance to stripe rust in barley

Abstract The identification and location of sources of genetic resistance to plant diseases are important contributions to the development of resistant varieties. The combination of different sources and types of resistance in the same genotype should assist in the development of durably resistant varieties. Using a doubled haploid (DH), mapping population of barley, we mapped a qualitative resistance gene (Rpsx) to barley stripe rust in the accession CI10587 (PI 243183) to the long arm of chromosome 1(7H). We combined the Rpsx gene, through a series of crosses, with three mapped and validated barley stripe rust resistance QTL alleles located on chromosomes 4(4H) (QTL4), 5(1H) (QTL5), and 7(5H) (QTL7). Three different barley DH populations were developed from these crosses, two combining Rpsx with QTL4 and QTL7, and the third combining Rpsx with QTL5. Disease severity testing in four environments and QTL mapping analyses confirmed the effects and locations of Rpsx, QTL4, and QTL5, thereby validating the original estimates of QTL location and effect. QTL alleles on chromosomes 4(4H) and 5(1H) were effective in decreasing disease severity in the absence of the resistance allele at Rpsx. Quantitative resistance effects were mainly additive, although magnitude interactions were detected. Our results indicate that combining qualitative and quantitative resistance in the same genotype is feasible. However, the durability of such resistance pyramids will require challenge from virulent isolates, which currently are not reported in North America.

[1]  W. Beavis QTL Analyses: Power, Precision, and Accuracy , 1997, Molecular Dissection of Complex Traits.

[2]  J. Parlevliet Race-specific resistance and cultivar-specific virulence in the barley-leaf rust pathosystem and their consequences for the breeding of leaf rust resistant barley , 1983, Euphytica.

[3]  D. Kudrna,et al.  A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome , 1993, Theoretical and Applied Genetics.

[4]  P. Hayes,et al.  Pyramiding Quantitative Trait Locus (QTL) Alleles Determining Resistance to Barley Stripe Rust , 2003 .

[5]  G. Khush,et al.  Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR , 1997, Theoretical and Applied Genetics.

[6]  M. Heun,et al.  Barley microsatellites: allele variation and mapping , 1995, Plant Molecular Biology.

[7]  C. Mundt Probability of mutation to multiple virulence and durability of resistance gene pyramids : further comments , 1991 .

[8]  Roy Johnson Past, present and future opportunities in breeding for disease resistance, with examples from wheat , 2004, Euphytica.

[9]  P. Hayes,et al.  A comparison of Hordeum bulbosum-mediated haploid production efficiency in barley using in vitro floret and tiller culture , 1989, Theoretical and Applied Genetics.

[10]  H. Leung,et al.  Mapping quantitative and qualitative disease resistance genes in a doubled haploid population of barley (Hordeum vulgare) , 2000, Theoretical and Applied Genetics.

[11]  T. Komatsuda,et al.  Map construction of sequence-tagged sites (STSs) in barley (Hordeum vulgare L.) , 1999, Theoretical and Applied Genetics.

[12]  P. Shewry,et al.  Cloned and mapped genes: current status. , 1992 .

[13]  J. Vanderplank Genetic and molecular basis of plant pathogenesis. , 1978 .

[14]  R. Shoemaker,et al.  Resistance gene analogs are conserved and clustered in soybean. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[15]  S. Knapp,et al.  Coincident QTL which determine seedling and adult plant resistance to stripe rust in barley , 2002 .

[16]  R. Michelmore,et al.  Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[17]  L. Broers,et al.  Evaluation of quantitative resistance to yellow rust (Puccinia striiformis f. sp. hordei) in the ICARDA/CIMMYT barley breeding programme , 1998 .

[18]  Zhikang Li,et al.  Pyramiding three bacterial blight resistance genes (xa5, xa13 and Xa21) using marker-assisted selection into indica rice cultivar PR106 , 2001, Theoretical and Applied Genetics.

[19]  J. E. Parlevliet,et al.  Identification and evaluation of quantitative resistance. , 1988 .

[20]  R. McIntosh,et al.  Anticipatory breeding for resistance to rust diseases in wheat. , 1997, Annual review of phytopathology.

[21]  P. H. Gregory Plant Diseases: Epidemics and Control, J.E. van der Plank. Academic Press, New York and London (1963), xvi, + 349. Price £4 , 1965 .

[22]  W. Peacock,et al.  APPROACHES TO CLONING PLANT GENES CONFERRING RESISTANCE TO FUNGAL PATHOGENS , 1988 .

[23]  S. Leal Genetics and Analysis of Quantitative Traits , 2001 .

[24]  J. Parlevliet Evidence of differential interaction in the polygenic Hoerdeum vulgare- Puccinia hordei relation during epidemic development , 1977 .

[25]  P. Shewry Barley: genetics, biochemistry, molecular biology and biotechnology , 1992 .

[26]  W. Powell,et al.  Discriminating between barley genotypes using microsatellite markers. , 1997, Genome.

[27]  M. Morgante,et al.  A simple sequence repeat-based linkage map of barley. , 2000, Genetics.

[28]  R. Michelmore Molecular approaches to manipulation of disease resistance genes. , 1995, Annual review of phytopathology.

[29]  A. Roelfs,et al.  Estimated relation between numbers of urediniospores of Puccinia graminis f. sp. tritici and rates of occurrence of virulence , 1985 .

[30]  W. Powell,et al.  Detection of quantitative trait loci for agronomic, yield, grain and disease characters in spring barley (Hordeum vulgare L.) , 1995, Theoretical and Applied Genetics.

[31]  Roy Johnson Durable resistance: definition of, genetic control, and attainment in plant breeding. , 1981 .

[32]  J. Plank,et al.  Plant Diseases: Epidemics and Control , 1964 .

[33]  M. Maroof,et al.  Development of simple sequence repeat DNA markers and their integration into a barley linkage map , 1996, Theoretical and Applied Genetics.

[34]  P. Hayes,et al.  Mapping genes for resistance to barley stripe rust (Puccinia striiformis f. sp. hordei) , 1994, Theoretical and Applied Genetics.