Genomic evidence supports a clonal diaspora model for metastases of esophageal adenocarcinoma

[1]  Michael C. Ryan,et al.  for single-cell sequencing data , 2020 .

[2]  Jeffrey W. Clark,et al.  Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers , 2019, Nature Medicine.

[3]  C. Curtis,et al.  Quantitative evidence for early metastatic seeding in colorectal cancer , 2019, Nature Genetics.

[4]  Yuan Ji,et al.  Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types , 2018, bioRxiv.

[5]  S. Tavaré,et al.  The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic , 2018, bioRxiv.

[6]  Peter J. Park,et al.  Aging and neurodegeneration are associated with increased mutations in single human neurons , 2017, Science.

[7]  Nicola D. Roberts,et al.  Pan-cancer analysis of whole genomes reveals driver rearrangements promoted by LINE-1 retrotransposition in human tumours , 2017, bioRxiv.

[8]  Benjamin J. Raphael,et al.  The evolutionary history of 2,658 cancers , 2017, Nature.

[9]  G. Getz,et al.  Mutational patterns in chemotherapy resistant muscle-invasive bladder cancer , 2017, Nature Communications.

[10]  Jesper Lagergren,et al.  Oesophageal cancer , 2017, The Lancet.

[11]  Chuang Tan,et al.  Universal Patterns of Selection in Cancer and Somatic Tissues , 2018, Cell.

[12]  S. Imbeaud,et al.  Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis , 2017, Nature Communications.

[13]  Jack Kuipers,et al.  Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors , 2017, Genome research.

[14]  D. Sugarbaker,et al.  Utility of Adjuvant Chemotherapy After Neoadjuvant Chemoradiation and Esophagectomy for Esophageal Cancer , 2017, Annals of surgery.

[15]  L. Dizdar,et al.  Disseminated tumour cells with highly aberrant genomes are linked to poor prognosis in operable oesophageal adenocarcinoma , 2017, British Journal of Cancer.

[16]  Tom Sante,et al.  Shallow Whole Genome Sequencing on Circulating Cell-Free DNA Allows Reliable Noninvasive Copy-Number Profiling in Neuroblastoma Patients , 2017, Clinical Cancer Research.

[17]  Johannes G. Reiter,et al.  Origins of lymphatic and distant metastases in human colorectal cancer , 2017, Science.

[18]  Y. Kitagawa,et al.  Three-field lymph node dissection in esophageal cancer surgery. , 2017, Journal of thoracic disease.

[19]  Robert J. Lonigro,et al.  Integrative Clinical Genomics of Metastatic Cancer , 2017, Nature.

[20]  S. Hochwald,et al.  Novel Calculator to Estimate Overall Survival Benefit from Neoadjuvant Chemoradiation in Patients with Esophageal Adenocarcinoma. , 2017, Journal of the American College of Surgeons.

[21]  M. Stratton,et al.  Universal Patterns of Selection in Cancer and Somatic Tissues , 2017, bioRxiv.

[22]  Nicholas Navin,et al.  Tumor evolution: Linear, branching, neutral or punctuated? , 2017, Biochimica et biophysica acta. Reviews on cancer.

[23]  S. Mocellin,et al.  Survival After Neoadjuvant and Adjuvant Treatments Compared to Surgery Alone for Resectable Esophageal Carcinoma: A Network Meta-analysis , 2017, Annals of surgery.

[24]  M. Shah,et al.  Oesophageal cancer , 2017, Nature Reviews Disease Primers.

[25]  Hans Clevers,et al.  Tissue-specific mutation accumulation in human adult stem cells during life , 2016, Nature.

[26]  Christophe Badie,et al.  Mutational signatures of ionizing radiation in second malignancies , 2016, Nature Communications.

[27]  Simon Tavaré,et al.  Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance , 2016, Nature Genetics.

[28]  Xiaoyu Chen,et al.  Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications , 2016, Bioinform..

[29]  G. Sella,et al.  Interpreting the Dependence of Mutation Rates on Age and Time , 2015, PLoS biology.

[30]  M. Stratton,et al.  Clock-like mutational processes in human somatic cells , 2015, Nature Genetics.

[31]  Ole Schulz-Trieglaff,et al.  Manta: Rapid detection of structural variants and indels for clinical sequencing applications , 2015, bioRxiv.

[32]  S. Tavaré,et al.  Whole-genome sequencing provides new insights into the clonal architecture of Barrett’s esophagus and esophageal adenocarcinoma , 2015, Nature Genetics.

[33]  Andrew Menzies,et al.  Subclonal diversification of primary breast cancer revealed by multiregion sequencing , 2015, Nature Medicine.

[34]  Nicolai J. Birkbak,et al.  Tracking the genomic evolution of esophageal adenocarcinoma through neoadjuvant chemotherapy. , 2015, Cancer discovery.

[35]  M. Nykter,et al.  The Evolutionary History of Lethal Metastatic Prostate Cancer , 2015, Nature.

[36]  C. Curtis,et al.  A Big Bang model of human colorectal tumor growth , 2015, Nature Genetics.

[37]  Quan P. Ly,et al.  Esophageal and Esophagogastric Junction Cancers, Version 2.2019, NCCN Clinical Practice Guidelines in Oncology. , 2019, Journal of the National Comprehensive Cancer Network : JNCCN.

[38]  Pieter Wesseling,et al.  DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly , 2014, Genome research.

[39]  Peter J. Campbell,et al.  Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis , 2014, Nature Communications.

[40]  Rebecca C Fitzgerald,et al.  Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis , 2014, Nature Genetics.

[41]  G. Parmigiani,et al.  Heterogeneity of genomic evolution and mutational profiles in multiple myeloma , 2014, Nature Communications.

[42]  C. Sima,et al.  Esophageal Cancer Recurrence Patterns and Implications for Surveillance , 2013, Journal of Thoracic Oncology.

[43]  David T. W. Jones,et al.  Signatures of mutational processes in human cancer , 2013, Nature.

[44]  Bruce A. Robertson,et al.  The Cancer Diaspora: Metastasis beyond the seed and soil hypothesis , 2013, 1308.1938.

[45]  A. McKenna,et al.  Exome and whole genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity , 2013, Nature Genetics.

[46]  V. P. Collins,et al.  Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics , 2013, Proceedings of the National Academy of Sciences.

[47]  Shankar Vembu,et al.  Inferring clonal evolution of tumors from single nucleotide somatic mutations , 2012, BMC Bioinformatics.

[48]  Kenny Q. Ye,et al.  An integrated map of genetic variation from 1,092 human genomes , 2012, Nature.

[49]  Peter J. Campbell,et al.  Evolution of the cancer genome , 2012, Nature Reviews Genetics.

[50]  N. Altorki,et al.  Worldwide Oesophageal Cancer Collaboration guidelines for lymphadenectomy predict survival following neoadjuvant therapy. , 2012, European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery.

[51]  M. Meyerson,et al.  Gastrointestinal adenocarcinomas of the esophagus, stomach, and colon exhibit distinct patterns of genome instability and oncogenesis. , 2012, Cancer research.

[52]  A. Børresen-Dale,et al.  The Life History of 21 Breast Cancers , 2012, Cell.

[53]  Wendy S. W. Wong,et al.  Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs , 2012, Bioinform..

[54]  O. Yokosuka,et al.  Abstract 4383: Targeting tumor microenvironment with gemcitabine is useful for the treatment of pancreatic ductal adenocarcinoma , 2012 .

[55]  Carlo C. Maley,et al.  Clonal evolution in cancer , 2012, Nature.

[56]  C. Compton,et al.  Esophagus and Esophagogastric Junction , 2012 .

[57]  V. Gebski,et al.  Survival after neoadjuvant chemotherapy or chemoradiotherapy for resectable oesophageal carcinoma: an updated meta-analysis. , 2011, The Lancet. Oncology.

[58]  闵先军,et al.  Oesophageal cancer , 2011 .

[59]  Japanese Gastric Cancer Association Japanese classification of gastric carcinoma: 3rd English edition , 2011, Gastric Cancer.

[60]  M. Nowak,et al.  Distant Metastasis Occurs Late during the Genetic Evolution of Pancreatic Cancer , 2010, Nature.

[61]  Pauline C Ng,et al.  Whole genome sequencing. , 2010, Methods in molecular biology.

[62]  Larry Norton,et al.  Tumor Self-Seeding by Circulating Cancer Cells , 2009, Cell.

[63]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[64]  C. Klein,et al.  Parallel progression of primary tumours and metastases , 2009, Nature Reviews Cancer.

[65]  A. Ullrich,et al.  Direct genetic analysis of single disseminated cancer cells for prediction of outcome and therapy selection in esophageal cancer. , 2008, Cancer cell.

[66]  W. Budach,et al.  Capecitabine and oxaliplatin for advanced esophagogastric cancer. , 2008, The New England journal of medicine.

[67]  Clive R. Taylor,et al.  The prognostic importance of immunohistochemically detected node metastases in resected esophageal adenocarcinoma. , 2004, The Annals of thoracic surgery.

[68]  C. Mariette,et al.  Pattern of recurrence following complete resection of esophageal carcinoma and factors predictive of recurrent disease , 2003, Cancer.

[69]  H. Kalthoff,et al.  Disseminated tumour cells , 2001, Virchows Archiv.

[70]  M. Sporn The war on cancer , 1996, The Lancet.

[71]  胃癌研究会 Japanese classification of gastric carcinoma , 1995 .

[72]  P. Nowell The clonal evolution of tumor cell populations. , 1976, Science.

[73]  L. Foulds The experimental study of tumor progression: a review. , 1954, Cancer research.

[74]  Anita D. Laton,et al.  A life history , 1943 .