Genomic determinants of prognosis in colorectal cancer.

Colorectal cancer progression is characterized by the sequential acquisition of multiple genetic aberrations. Insights into the biology of cancer cell and the development of novel methodologies have open a new frontier in the search of independent molecular factors to better predict outcome. Besides the generation of a large list of candidate markers, their applicability in routine clinical settings has been hindered by the heterogeneity of the disease. The analysis of cumulated genetic damage offers a more comprehensive measure of the cancer cell's genomic disruption and appears as a gauge of malignant potential. The prognostic application of different determinants of genomic damage is reviewed.

[1]  J. Inazawa,et al.  Chromosomal aberrations in colorectal cancers and liver metastases analyzed by comparative genomic hybridization , 2001, International journal of cancer.

[2]  M. Macey Flow cytometry : clinical applications , 1993 .

[3]  A. Walch,et al.  Distinct chromosomal imbalances in nonpolypoid and polypoid colorectal adenomas indicate different genetic pathways in the development of colorectal neoplasms. , 2003, The American journal of pathology.

[4]  K. Kinzler,et al.  Clues to the pathogenesis of familial colorectal cancer. , 1993, Science.

[5]  W. Bodmer,et al.  A comparison of the genetic pathways involved in the pathogenesis of three types of colorectal cancer , 1998, The Journal of pathology.

[6]  M. Meyers,et al.  Chromosomal instability and its relationship to other end points of genomic instability. , 1997, Cancer research.

[7]  H. Wieand,et al.  DNA ploidy and cell kinetic measurements as predictors of recurrence and survival in stages B2 and C colorectal adenocarcinoma , 1991, Cancer.

[8]  L. Loeb Microsatellite Instability: Marker of a Mutator Phenotype in Cancer , 1994 .

[9]  B. Dutrillaux,et al.  Colorectal carcinogenesis: from chromosomal evolution pathways to molecular pathogenesis. , 1997, Cancer genetics and cytogenetics.

[10]  S N Thibodeau,et al.  Microsatellite instability in cancer of the proximal colon. , 1993, Science.

[11]  Y. Nakamura,et al.  Clinical and pathological associations with allelic loss in colorectal carcinoma [corrected]. , 1989, JAMA.

[12]  D. Labuda,et al.  Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. , 1994, Genomics.

[13]  G. Capellá,et al.  DCC and SMAD4 alterations in human colorectal and pancreatic tumor dissemination , 2000, Oncogene.

[14]  F. Mitelman,et al.  Recurrent chromosome aberrations in cancer. , 2000, Mutation research.

[15]  H. Nielsen,et al.  DNA ploidy in colorectal cancer, heterogeneity within and between tumors and relation to survival. , 1999, Cytometry.

[16]  E. Mini,et al.  Flow cytometric analysis of DNA ploidy and cell proliferation activity in colorectal carcinoma. , 1995, Anticancer research.

[17]  D. Dexter,et al.  Mammalian Tumor Cell Heterogeneity , 1986 .

[18]  G. Capellá,et al.  Prospective assessment of allelic losses at 4p14-16 in colorectal cancer: two mutational patterns and a locus associated with poorer survival. , 1999, Clinical cancer research : an official journal of the American Association for Cancer Research.

[19]  G. Bolis Randomised comparison of cisplatin with Cyclophosphamide/Cisplatin and with Cyclophosphamide/Doxorubicin/Cisplatin in advanced ovarian cancer , 1988 .

[20]  B. Dutrillaux,et al.  Existence of two distinct processes of chromosomal evolution in near-diploid colorectal tumors. , 1988, Cancer genetics and cytogenetics.

[21]  I. Tomlinson,et al.  Molecular genetics of colon cancer , 1997, Cancer and Metastasis Reviews.

[22]  M. Benito,et al.  Prognostic value of genomic damage in non-small-cell lung cancer. , 1998, British Journal of Cancer.

[23]  G. Capellá,et al.  Assessment of genomic damage in colorectal cancer by DNA fingerprinting: prognostic applications. , 1997, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[24]  R. Lothe,et al.  Allelotype profiles of local recurrences and distant metastases from colorectal‐cancer patients , 1996, International journal of cancer.

[25]  N. Nowak,et al.  Intrachromosomal genomic instability in human sporadic colorectal cancer measured by genome-wide allelotyping and inter-(simple sequence repeat) PCR. , 2001, Cancer research.

[26]  C. Boland,et al.  Genetic pathways in the evolution of morphologically distinct colorectal neoplasms. , 2001, Cancer research.

[27]  M. Benito,et al.  Differential prognosis of replication error phenotype and loss of heterozygosity in sporadic colorectal cancer. , 1999, European journal of cancer.

[28]  O. Sieber,et al.  Genomic instability — the engine of tumorigenesis? , 2003, Nature Reviews Cancer.

[29]  J. Yokota,et al.  Molecular karyotype (amplotype) of metastatic colorectal cancer by unbiased arbitrarily primed PCR DNA fingerprinting. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[30]  R. Tang,et al.  Prognostic evaluation of DNA flow cytometric and histopathologic parameters of colorectal cancer , 1995, Cancer.

[31]  K. Kinzler,et al.  Genetic instabilities in human cancers , 1998, Nature.

[32]  A. Schäffer,et al.  Stable karyotypes in epithelial cancer cell lines despite high rates of ongoing structural and numerical chromosomal instability. , 2002, Neoplasia.

[33]  F T Bosman,et al.  Intratumor genetic heterogeneity in advanced human colorectal adenocarcinoma , 2001, International journal of cancer.

[34]  A. Wyllie,et al.  Heterogeneity studies identify a subset of sporadic colorectal cancers without evidence for chromosomal or microsatellite instability , 1999, Oncogene.

[35]  B. Vogelstein,et al.  A genetic model for colorectal tumorigenesis , 1990, Cell.

[36]  G. Thomas,et al.  Alternative genetic pathways in colorectal carcinogenesis. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[37]  I. D'Agnano,et al.  Evaluation of multiple bio‐pathological factors in colorectal adenocarcinomas: Independent prognostic role of p53 and bcl‐2 , 1999, International journal of cancer.

[38]  W. Giaretti A model of DNA aneuploidization and evolution in colorectal cancer. , 1994, Laboratory investigation; a journal of technical methods and pathology.

[39]  G. Capellá,et al.  Tracking recurrent quantitative genomic alterations in colorectal cancer: allelic losses in chromosome 4 correlate with tumor aggressiveness. , 1999, Laboratory investigation; a journal of technical methods and pathology.

[40]  M. Peinado,et al.  Assessment of cumulated genetic alterations in colorectal cancer. , 2003, Histology and histopathology.

[41]  R. Bast,et al.  2000 update of recommendations for the use of tumor markers in breast and colorectal cancer: clinical practice guidelines of the American Society of Clinical Oncology. , 2001, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[42]  B. Dutrillaux,et al.  DNA content and genetic evolution of human colorectal adenocarcinoma. A study by flow cytometry and cytogenetic analysis , 1988, International journal of cancer.

[43]  T. G. Parks,et al.  Prognostic factors in colorectal cancer , 1992, The British journal of surgery.

[44]  A. Feinberg,et al.  MULTIPLE GENETIC ALTERATIONS IN DISTAL AND PROXIMAL COLORECTAL CANCER , 1989, The Lancet.

[45]  W. Kuo,et al.  High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays , 1998, Nature Genetics.

[46]  M. Leppert,et al.  Allelic Loss in Colorectal Carcinoma , 1989 .

[47]  C. Lengauer How do tumors make ends meet? , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[48]  A. Andrén-sandberg,et al.  Cytogenetic analysis of 52 colorectal carcinomas‐‐non‐random aberration pattern and correlation with pathologic parameters , 1993, International journal of cancer.

[49]  Ash A. Alizadeh,et al.  Genome-wide analysis of DNA copy-number changes using cDNA microarrays , 1999, Nature Genetics.

[50]  M. Rhyu,et al.  Genetic classification of colorectal cancer based on chromosomal loss and microsatellite instability predicts survival. , 2002, Clinical cancer research : an official journal of the American Association for Cancer Research.

[51]  K. Kinzler,et al.  Mechanisms underlying losses of heterozygosity in human colorectal cancers , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[52]  N. Petrelli,et al.  The onset and extent of genomic instability in sporadic colorectal tumor progression. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[53]  E. Stanbridge,et al.  Defects in replication fidelity of simple repeated sequences reveal a new mutator mechanism for oncogenesis. , 1994, Cold Spring Harbor symposia on quantitative biology.

[54]  D. Sargent,et al.  Prognostic value of proliferation, apoptosis, defective DNA mismatch repair, and p53 overexpression in patients with resected Dukes' B2 or C colon cancer: a North Central Cancer Treatment Group Study. , 2016, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[55]  Ian Tomlinson,et al.  Selection, the mutation rate and cancer: Ensuring that the tail does not wag the dog , 1999, Nature medicine.

[56]  K. Kinzler,et al.  Cancer genes and the pathways they control , 2004, Nature Medicine.

[57]  D. Ledbetter,et al.  Chromosome 17 deletions and p53 gene mutations in colorectal carcinomas. , 1989, Science.

[58]  Teruhiko Yoshida,et al.  The genomic damage estimated by arbitrarily primed PCR DNA fingerprinting is useful for the prognosis of gastric cancer. , 2003, Gastroenterology.

[59]  C. Ratto,et al.  Prognostic factors in colorectal cancer , 1998, Diseases of the colon and rectum.

[60]  A. Velázquez,et al.  Isolation and characterization of allelic losses and gains in colorectal tumors by arbitrarily primed polymerase chain reaction. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[61]  Darryl Shibata,et al.  Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis , 1993, Nature.

[62]  A. Feinberg,et al.  Microallelotyping defines the sequence and tempo of alleiic losses at tumour suppressor gene loci during colorectal cancer progression , 1995, Nature Medicine.

[63]  H. McLeod,et al.  Colorectal cancer genomics: evidence for multiple genotypes which influence survival , 2001, British Journal of Cancer.

[64]  D. Hanahan,et al.  The Hallmarks of Cancer , 2000, Cell.

[65]  J. Coxhead,et al.  Mutations in APC, Kirsten-ras, and p53—alternative genetic pathways to colorectal cancer , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[66]  J. Welsh,et al.  Fingerprinting genomes using PCR with arbitrary primers. , 1990, Nucleic acids research.

[67]  V. Moreno,et al.  Redefining the Significance of Aneuploidy in the Prognostic Assessment of Colorectal Cancer , 2001, Laboratory Investigation.

[68]  C. Ma,et al.  Histopathologic parameters and DNA analysis in colorectal adenocarcinomas. , 1989, Pathology annual.

[69]  G. Capellá,et al.  The structural nature of chromosomal instability in colon cancer cells , 2003, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[70]  Y. Nakamura,et al.  Genetic alterations during colorectal-tumor development. , 1988, The New England journal of medicine.

[71]  G. Fleuren,et al.  Evidence of clonal divergence in colorectal carcinoma , 1997, Cancer.

[72]  D. Ransohoff Rules of evidence for cancer molecular-marker discovery and validation , 2004, Nature Reviews Cancer.

[73]  L. Suardet,et al.  Independent prognostic value of ploidy in colorectal cancer. A prospective study using image cytometry , 1990, Cancer.

[74]  N. Petrelli,et al.  Genomic instability in sporadic colorectal cancer quantitated by inter‐simple sequence repeat PCR analysis , 1997, Genes, chromosomes & cancer.

[75]  K. Kinzler,et al.  Genetic instability in colorectal cancers , 1997, Nature.

[76]  A. Børresen-Dale,et al.  Different genetic pathways to proximal and distal colorectal cancer influenced by sex‐related factors , 1997, International journal of cancer.

[77]  B. Johansson,et al.  Tumor karyotype predicts clinical outcome in colorectal cancer patients. , 2004, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[78]  B. Dutrillaux Pathways of chromosome alteration in human epithelial cancers. , 1995, Advances in cancer research.

[79]  J. Herman,et al.  Common genetic evolutionary pathways in familial adenomatous polyposis tumors. , 2003, Cancer research.

[80]  Thomas Ried,et al.  Comparative genomic hybridization reveals a specific pattern of chromosomal gains and losses during the genesis of colorectal tumors , 1996, Genes, chromosomes & cancer.

[81]  V. Moreno,et al.  Genetic pathways and genome-wide determinants of clinical outcome in colorectal cancer. , 2003, Cancer research.

[82]  K. Kinzler,et al.  Lessons from Hereditary Colorectal Cancer , 1996, Cell.

[83]  Martin A. Nowak,et al.  The significance of unstable chromosomes in colorectal cancer , 2003, Nature Reviews Cancer.

[84]  Ash A. Alizadeh,et al.  Genome-wide analysis of DNA copy number variation in breast cancer using DNA microarrays , 1999, Nature Genetics.

[85]  M. Melamed,et al.  Consensus review of the clinical utility of DNA flow cytometry in colorectal cancer. , 1993, Cytometry.

[86]  J. Arends,et al.  Colorectal adenoma to carcinoma progression follows multiple pathways of chromosomal instability. , 2002, Gastroenterology.

[87]  R. Kolodner,et al.  Biochemistry and genetics of eukaryotic mismatch repair. , 1996, Genes & development.

[88]  Mattias Höglund,et al.  Dissecting karyotypic patterns in colorectal tumors: two distinct but overlapping pathways in the adenoma-carcinoma transition. , 2002, Cancer research.

[89]  P. Schofield,et al.  Refining the prognostic significance of dna ploidy status in colorectal cancer: A prospective flow cytometric study , 1988, International journal of cancer.

[90]  T. Stokke,et al.  Prognostic significance of recurrent chromosomal aberrations detected by comparative genomic hybridization in sporadic colorectal cancer , 2001, International Journal of Colorectal Disease.

[91]  Y. Nakamura,et al.  Allelotype of colorectal carcinomas. , 1989, Science.

[92]  R. Nakhleh,et al.  Prognostic significance of DNA ploidy and proliferation in 309 colorectal carcinomas as determined by two‐color multiparametric DNA flow cytometry , 1997, Cancer.

[93]  M E Hammond,et al.  Prognostic factors in colorectal cancer. College of American Pathologists Consensus Statement 1999. , 2000, Archives of pathology & laboratory medicine.

[94]  B. Vogelstein,et al.  The relationship of DNA aneuploidy to molecular genetic alterations in colorectal carcinoma. , 1992, Gastroenterology.

[95]  T. Stokke,et al.  Chromosomal gains and losses in primary colorectal carcinomas detected by CGH and their associations with tumour DNA ploidy, genotypes and phenotypes , 1999, British Journal of Cancer.