DeepLN: A framework for automatic lung nodule detection using multi-resolution CT screening images

Abstract Computed tomography (CT) is an important and valuable tool for detecting and diagnosing lung cancer at an early stage. Commonly, CT screenings with lower dose and resolution are used for preliminary screening. In particular, many hospitals in smaller towns only provide CT screenings at low resolution. However,when patients are diagnosed with suspected cancer, they are transferred or recommended to larger hospitals for more sophisticated examinations with high-resolution CT scans. Therefore, multi-resolution CT images deserve attention and are critical in clinical practice. Currently, the available open source datasets only contain high-resolution CT screening images. To address this problem, a multi-resolution CT screening image dataset called the DeepLNDataset is constructed. A three-level labeling criterion and a semi-automatic annotation system are presented to guarantee the correctness and efficiency of lung nodule annotation. Moreover, a novel framework called DeepLN is proposed to detect lung nodules in both low-resolution and high-resolution CT screening images. The multi-level features are extracted by a neural-network based detector to locate the lung nodules. Hard negative mining and a modified focal loss function are employed to solve the common category imbalance problem. A novel non-maximum suppression based ensemble strategy is proposed to synthesize the results from multiple neural network models trained on CT image datasets of different resolutions. To the best of our knowledge, this is the first work that considers the influence of multiple resolutions on lung nodule detection. The experimental results demonstrate that the proposed method can address this issue well.

[1]  Bram van Ginneken,et al.  Off-the-shelf convolutional neural network features for pulmonary nodule detection in computed tomography scans , 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

[2]  Trevor Darrell,et al.  Rich Feature Hierarchies for Accurate Object Detection and Semantic Segmentation , 2013, 2014 IEEE Conference on Computer Vision and Pattern Recognition.

[3]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[4]  U. Rajendra Acharya,et al.  Computer-aided diagnosis of atrial fibrillation based on ECG Signals: A review , 2018, Inf. Sci..

[5]  Hamido Fujita,et al.  Computer Aided detection for fibrillations and flutters using deep convolutional neural network , 2019, Inf. Sci..

[6]  M. Mascalchi,et al.  Screening of lung cancer with low dose spiral CT: results of a three year pilot study and design of the randomised controlled trial ''Italung-CT''. , 2005, La Radiologia medica.

[7]  Jian Sun,et al.  Spatial Pyramid Pooling in Deep Convolutional Networks for Visual Recognition , 2015, IEEE Trans. Pattern Anal. Mach. Intell..

[8]  Luc Van Gool,et al.  Efficient Non-Maximum Suppression , 2006, 18th International Conference on Pattern Recognition (ICPR'06).

[9]  A. Bankier,et al.  Guidelines for Management of Incidental Pulmonary Nodules Detected on CT Images: From the Fleischner Society 2017. , 2017, Radiology.

[10]  Zhang Yi,et al.  DeepCXray: Automatically Diagnosing Diseases on Chest X-Rays Using Deep Neural Networks , 2018, IEEE Access.

[11]  Sharmila. M. Shinde,et al.  A Survey on Ensemble Methods for High Dimensional Data Classification in Biomedicine Field , 2015 .

[12]  Zhang Yi,et al.  DeepLNAnno: a Web-Based Lung Nodules Annotating System for CT Images , 2019, Journal of Medical Systems.

[13]  Le Lu,et al.  Improving Deep Pancreas Segmentation in CT and MRI Images via Recurrent Neural Contextual Learning and Direct Loss Function , 2017, ArXiv.

[14]  Ugo Pastorino,et al.  Annual or biennial CT screening versus observation in heavy smokers: 5-year results of the MILD trial , 2012, European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation.

[15]  Bram van Ginneken,et al.  Automatic detection of subsolid pulmonary nodules in thoracic computed tomography images , 2014, Medical Image Anal..

[16]  Temesguen Messay,et al.  A new computationally efficient CAD system for pulmonary nodule detection in CT imagery , 2010, Medical Image Anal..

[17]  Hao Chen,et al.  Automated Pulmonary Nodule Detection via 3D ConvNets with Online Sample Filtering and Hybrid-Loss Residual Learning , 2017, MICCAI.

[18]  Xiaohui Xie,et al.  DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification , 2018, 2018 IEEE Winter Conference on Applications of Computer Vision (WACV).

[19]  Bram van Ginneken,et al.  Pulmonary Nodule Detection in CT Images: False Positive Reduction Using Multi-View Convolutional Networks , 2016, IEEE Transactions on Medical Imaging.

[20]  Jean Paul Barddal,et al.  A Survey on Ensemble Learning for Data Stream Classification , 2017, ACM Comput. Surv..

[21]  Kaiming He,et al.  Focal Loss for Dense Object Detection , 2017, 2017 IEEE International Conference on Computer Vision (ICCV).

[22]  Kaiming He,et al.  Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks , 2015, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[23]  Ming Yang,et al.  3D Convolutional Neural Networks for Human Action Recognition , 2010, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[24]  Richard C. Pais,et al.  The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans. , 2011, Medical physics.

[25]  Bram van Ginneken,et al.  A large-scale evaluation of automatic pulmonary nodule detection in chest CT using local image features and k-nearest-neighbour classification , 2009, Medical Image Anal..

[26]  Abhinav Gupta,et al.  Training Region-Based Object Detectors with Online Hard Example Mining , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[27]  Piergiorgio Cerello,et al.  A novel multithreshold method for nodule detection in lung CT. , 2009, Medical physics.

[28]  Bram van Ginneken,et al.  Towards automatic pulmonary nodule management in lung cancer screening with deep learning , 2016, Scientific Reports.

[29]  Thomas G. Dietterich Multiple Classifier Systems , 2000, Lecture Notes in Computer Science.

[30]  Hao Chen,et al.  Multilevel Contextual 3-D CNNs for False Positive Reduction in Pulmonary Nodule Detection , 2017, IEEE Transactions on Biomedical Engineering.

[31]  Ross B. Girshick,et al.  Fast R-CNN , 2015, 1504.08083.

[32]  D. Xu,et al.  Nodule management protocol of the NELSON randomised lung cancer screening trial. , 2006, Lung cancer.

[33]  Maxime Descoteaux,et al.  Medical Image Computing and Computer Assisted Intervention − MICCAI 2017: 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part III , 2017, Lecture Notes in Computer Science.

[34]  Zhe Li,et al.  Evaluate the Malignancy of Pulmonary Nodules Using the 3-D Deep Leaky Noisy-OR Network , 2017, IEEE Transactions on Neural Networks and Learning Systems.

[35]  Luca Bogoni,et al.  Performance of computer-aided detection of pulmonary nodules in low-dose CT , 2018 .