Reconstructing an ancestral genome using minimum segments duplications and reversals

[1]  Pavel A. Pevzner,et al.  Transforming men into mice (polynomial algorithm for genomic distance problem) , 1995, Proceedings of IEEE 36th Annual Foundations of Computer Science.

[2]  R. Ravi,et al.  Of mice and men: algorithms for evolutionary distances between genomes with translocation , 1995, SODA '95.

[3]  Pavel A. Pevzner,et al.  Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals , 1995, JACM.

[4]  Sridhar Hannenhalli,et al.  Polynomial-time Algorithm for Computing Translocation Distance Between Genomes , 1995, Discret. Appl. Math..

[5]  Michael A. Charleston,et al.  Reconciled trees and incongruent gene and species trees , 1996, Mathematical Hierarchies and Biology.

[6]  P. Pevzner.  Transforming Men into Mice , 1996 .

[7]  Haim Kaplan,et al.  Faster and simpler algorithm for sorting signed permutations by reversals , 1997, SODA '97.

[8]  David Sankoff,et al.  The Median Problem for Breakpoints in Comparative Genomics , 1997, COCOON.

[9]  R. Mazzarella,et al.  Pathological consequences of sequence duplications in the human genome. , 1998, Genome research.

[10]  Vineet Bafna,et al.  Sorting by Transpositions , 1998, SIAM J. Discret. Math..

[11]  João Meidanis,et al.  Reversal and transposition distance of linear chromosomes , 1998, Proceedings. String Processing and Information Retrieval: A South American Symposium (Cat. No.98EX207).

[12]  David Sankoff,et al.  Genome rearrangement with gene families , 1999, Bioinform..

[13]  Pavel A. Pevzner,et al.  Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals , 1999, J. ACM.

[14]  E. Eichler,et al.  CAGGG repeats and the pericentromeric duplication of the hominoid genome. , 1999, Genome research.

[15]  El-Mabrouk,et al.  On the Reconstruction of Ancient Doubled Circular Genomes Using Minimum Reversals. , 1999, Genome informatics. Workshop on Genome Informatics.

[16]  D. Sankoff,et al.  Gene Order Breakpoint Evidence in Animal Mitochondrial Phylogeny , 1999, Journal of Molecular Evolution.

[17]  David Sankoff,et al.  Reconstructing the pre-doubling genome , 1999, RECOMB.

[18]  D. Sankoff,et al.  Duplication, Rearrangement, and Reconciliation , 2000 .

[19]  D. Sankoff,et al.  Comparative Genomics: "Empirical And Analytical Approaches To Gene Order Dynamics, Map Alignment And The Evolution Of Gene Families" , 2000 .

[20]  N. El-Mabrouk.  Recovery of Ancestral Tetraploids , 2000 .

[21]  E. Eichler,et al.  The Pathological Consequences and Evolutionary Implications of Recent Human Genomic Duplications , 2000 .

[22]  R. Page,et al.  Genetree: A Tool for Exploring Gene Family Evolution , 2000 .

[23]  David Sankoff,et al.  Early eukaryote evolution based on mitochondrial gene order breakpoints , 2000, RECOMB '00.

[24]  Anne Bergeron,et al.  A very elementary presentation of the Hannenhalli-Pevzner theory , 2005, Discret. Appl. Math..

[25]  David Sankoff,et al.  The Reconstruction of Doubled Genomes , 2003, SIAM J. Comput..