Small angle neutron scattering for the structural study of intrinsically disordered proteins in solution: a practical guide.

Small angle neutron scattering (SANS) allows studying bio-macromolecular structures and interactions in solution. It is particularly well-suited to study structural properties of intrinsically disordered proteins (IDPs) over a wide range of length-scales ranging from global aspects (radii of gyration and molecular weight) down to short-distance properties (e.g., cross-sectional analysis). In this book chapter, we provide a practical guide on how to carry out SANS experiments on IDPs and discuss the complementary aspects and strengths of SANS with respect to small angle X-ray scattering (SAXS).

[1]  J. Smith,et al.  How random is a highly denatured protein? , 1994, Biophysical chemistry.

[2]  D I Svergun,et al.  Protein hydration in solution: experimental observation by x-ray and neutron scattering. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[3]  D. Shortle,et al.  Persistence of Native-Like Topology in a Denatured Protein in 8 M Urea , 2001, Science.

[4]  O. Glatter,et al.  19 – Small-Angle X-ray Scattering , 1973 .

[5]  G. Fournet,et al.  Small‐Angle Scattering of X‐Rays , 1956 .

[6]  B. Jacrot,et al.  REVIEW ARTICLE: The study of biological structures by neutron scattering from solution , 1976 .

[7]  M. Blackledge,et al.  Structural characterization of flexible proteins using small-angle X-ray scattering. , 2007, Journal of the American Chemical Society.

[8]  K. Plaxco,et al.  Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins. , 2002, Advances in protein chemistry.

[9]  B. Roux,et al.  Small-angle neutron scattering by a strongly denatured protein: analysis using random polymer theory. , 1997, Biophysical journal.

[10]  Dmitri I. Svergun,et al.  PRIMUS: a Windows PC-based system for small-angle scattering data analysis , 2003 .

[11]  John A. Tainer,et al.  X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution , 2007, Quarterly Reviews of Biophysics.

[12]  Peter Schurtenberger,et al.  Scattering Functions of Semiflexible Polymers with and without Excluded Volume Effects , 1996 .

[13]  D. Svergun,et al.  Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution , 2003, Quarterly Reviews of Biophysics.

[14]  Harold A. Scheraga,et al.  Structure of Water and Hydrophobic Bonding in Proteins. I. A Model for the Thermodynamic Properties of Liquid Water , 1962 .

[15]  Christian Griesinger,et al.  Quantitative determination of the conformational properties of partially folded and intrinsically disordered proteins using NMR dipolar couplings. , 2009, Structure.

[16]  Jill Trewhella,et al.  Small‐angle scattering for structural biology—Expanding the frontier while avoiding the pitfalls , 2010, Protein science : a publication of the Protein Society.

[17]  K. Plaxco,et al.  Unfolded, yes, but random? Never! , 2001, Nature Structural Biology.

[18]  Excluded volume in the configurational distribution of a strongly‐denatured protein , 1998, Protein science : a publication of the Protein Society.

[19]  William T Heller,et al.  Small-angle neutron scattering and contrast variation: a powerful combination for studying biological structures. , 2010, Acta crystallographica. Section D, Biological crystallography.

[20]  D. I. Svergun,et al.  Structure Analysis by Small-Angle X-Ray and Neutron Scattering , 1987 .

[21]  P. Debye,et al.  Molecular-weight determination by light scattering. , 1947, The Journal of physical and colloid chemistry.

[22]  M. Kataoka,et al.  Structural characterization of the molten globule and native states of apomyoglobin by solution X-ray scattering. , 1995, Journal of molecular biology.

[23]  M. Brillouin,et al.  La diffraction des rayons X aux très petits angles: application a l'étude de phénomènes ultramicroscopiques , 1939 .

[24]  Pau Bernadó,et al.  A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[25]  D. Svergun,et al.  Small-angle scattering studies of biological macromolecules in solution , 2003 .

[26]  M. Blackledge,et al.  Quantitative modelfree analysis of urea binding to unfolded ubiquitin using a combination of small angle X-ray and neutron scattering. , 2009, Journal of the American Chemical Society.

[27]  P. Vachette,et al.  Heat-induced unfolding of neocarzinostatin, a small all-beta protein investigated by small-angle X-ray scattering. , 2001, Journal of molecular biology.

[28]  R. Duplessix,et al.  Scattering function of polystyrene , 1987 .

[29]  Robin S. Dothager,et al.  Random-coil behavior and the dimensions of chemically unfolded proteins. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[30]  G. Zaccai,et al.  Determination of molecular weight by neutron scattering , 1981 .

[31]  Sebastian Doniach,et al.  Small-angle X-ray scattering from RNA, proteins, and protein complexes. , 2007, Annual review of biophysics and biomolecular structure.

[32]  T. Creighton Proteins: Structures and Molecular Properties , 1986 .

[33]  S Doniach,et al.  Changes in biomolecular conformation seen by small angle X-ray scattering. , 2001, Chemical reviews.

[34]  B. Hsiao,et al.  Small-angle X-ray scattering of polymers. , 2001, Chemical reviews.

[35]  Dmitri I. Svergun,et al.  Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering , 2007 .

[36]  F. Allain,et al.  Recent advances in segmental isotope labeling of proteins: NMR applications to large proteins and glycoproteins , 2010, Journal of biomolecular NMR.